MetPP statistics

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MetPP specifications

Information


Unique identifier OMICS_23208
Name MetPP
Alternative name METabolomics Profiling Pipeline
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some peak lists deconvoluted from the instrument data.
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Stability Alpha
Maintained Yes

Versioning


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Maintainer


  • person_outline Xiang Zhang <>

Additional information


MetPP is a part of the MetaOpen tool.

Publication for METabolomics Profiling Pipeline

MetPP in publications

 (5)
PMCID: 5944366
PMID: 29774011
DOI: 10.3389/fmicb.2018.00760

[…] (s/n) of 5 for all subpeaks. peaks were required to have a s/n of 10 and have a minimum similarity score of 800 before assigning a name. unique mass was used for area and height calculation., metpp was used to align the samples (). sample files and a derivatization reagent blank file were uploaded from chromatof. unknowns were retained during the peak alignment process. the derivatization […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] mzmine 2 platform and addresses issues from the first version such as fragment ions that are produced by more than 1 co-eluting components, as well as improved sensitivity and robustness. finally, metpp [] is a processing tool that includes normalization and statistical analysis but is directed toward data emanating from the gc × gc–time of flight ms system., extracting compound mass spectra […]

PMCID: 4964453
PMID: 27420056
DOI: 10.3390/ijms17071077

[…] (tps) genes, ten putative trehalose-6-phosphate phosphatase (tpp) genes, and two trehalase (tre) genes from the cassava genome databases (). all these genes encoded full length enzymes, except metpp6, which lacked a few residues on the carboxyl-terminal due to incomplete sequencing; however, all motifs required for tps and tpp activity were present. some small tps and tpp gene fragments […]

PMCID: 4331360
PMID: 25688563
DOI: 10.1371/journal.pone.0118262

[…] all subpeaks. peaks were required to have a s/n of 10 and have a minimum similarity score of 800 before assigning a name. unique mass was used for area and height calculation., to align the samples, metpp (http://metaopen.sourceforge.net/metpp.html) was used []. sample files and a derivatization reagent blank file were uploaded from chromatof. unknowns were retained during the peak alignment […]

PMCID: 4308021
PMID: 25518943
DOI: 10.1186/s12918-014-0134-y

[…] all subpeaks. peaks were required to have a s/n of 10 and have a minimum similarity score of 800 before assigning a name. unique mass was used for area and height calculation., to align the samples, metpp (http://metaopen.sourceforge.net/metpp.html) was used []. sample files and a derivatization reagent blank file were uploaded from chromatof. unknowns were retained during the peak alignment […]


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MetPP institution(s)
Department of Chemistry, University of Louisville, KY, USA; Department of Bioinformatics and Biostatistics, University of Louisville, KY, USA; Department of Pharmacology & Toxicology, University of Louisville, KY, USA; Alcohol Research Center, University of Louisville, KY, USA; Department of Medicine, University of Louisville, KY, USA; Robley Rex Louisville VAMC, Louisville, KY, USA
MetPP funding source(s)
Supported by National Institute of Health (NIH) grants 1RO1GM087735, R21ES021311, P01AA017103, R37AA010762 and 1RC2AA019385, and the VA.

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