Protocols

METU-SNP specifications

Information


Unique identifier OMICS_24992
Name METU-SNP
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Yesim Aydin Son

Publication for METU-SNP

METU-SNP citation

call_split

A Prostate Cancer Model Build by a Novel SVM ID3 Hybrid Feature Selection Method Using Both Genotyping and Phenotype Data from dbGaP

2014
PLoS One
PMCID: 3961262
PMID: 24651484
DOI: 10.1371/journal.pone.0091404
call_split See protocol

[…] hreshold for the association of the SNPs with prostate cancer was determined as p<0.005 after the GWAS and 22,848 SNPs satisfying this condition formed the first representative subset. At second step METU-SNP's AHP (Analytical Hierarchical Process) feature was used to prioritize SNPs based on the biological and the statistical significance, which filtered the associated SNPs down to 2710 SNPs.Data […]

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