MetWAMer statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

MetWAMer specifications


Unique identifier OMICS_09988
Name MetWAMer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for MetWAMer

MetWAMer in publications

PMCID: 3287592
PMID: 22369295
DOI: 10.1186/1471-2164-12-S4-S9

[…] in statistically-based models for tis prediction can be achieved by taking the class of each potential start-methionine into account, pending certain testing conditions. they developed the metwamer package for tis prediction and demonstrated that the proposed model based on perceptron is suitable for the tis identification task., having identified that the problem of predicting the tis […]

PMCID: 2964019
PMID: 21847242
DOI: 10.1093/database/bap020

[…] evm reconciles: gene structure predictions generated by the ab initio gene finders augustus () and genemark.hmm (), genes functionally supported by cdna alignments as predicted by the geneseqer + metwamer system (), as well as similarity data alignments generated by genomethreader [protein alignments ()] and geneseqer [cdna alignments ()]. elements in this panel of gene finders were selected […]

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MetWAMer institution(s)
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA

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