MeV statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MeV
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Tool usage distribution map

This map represents all the scientific publications referring to MeV per scientific context
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Associated diseases

This word cloud represents MeV usage per disease context
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Popular tool citations

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Protocols

MeV specifications

Information


Unique identifier OMICS_00781
Name MeV
Alternative names Multiple experiment Viewer, WebMeV
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Version 4.9.0
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Documentation


Additional information


Standalone version: https://sourceforge.net/projects/mev-tm4/

Information


Unique identifier OMICS_00781
Name MeV
Alternative names Multiple experiment Viewer, WebMeV
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Additional information


Standalone version: https://sourceforge.net/projects/mev-tm4/

Publication for Multiple experiment Viewer

MeV citations

 (11)
library_books

Effect of weight loss on circulating fatty acid profiles in overweight subjects with high visceral fat area: a 12 week randomized controlled trial

2018
PMCID: 5822615
PMID: 29471812
DOI: 10.1186/s12937-018-0323-4

[…] inear model test was performed to adjust the baseline values of the changed values. A Pearson’s correlation coefficient was used to examine the relations among variables. A heat map was created using Multiple Experiment Viewer (MeV) version 4.9.0 (http://www.tm4.org/) to visualize and evaluate the relations among variables in the study population. The results are expressed as the mean ± standard e […]

library_books

miR 21 5p regulates type II alveolar epithelial cell apoptosis in hyperoxic acute lung injury

2018
PMCID: 5866023
PMID: 29436647
DOI: 10.3892/mmr.2018.8560

[…] cantly differentially expressed were identified by a volcano plot. Finally, hierarchical clustering was performed to determine the differences in the miRNA expression profiles among the samples using WebMeV software (version 4.6; http://mev.tm4.org/) ().To further investigate the functional roles of miRNA, the putative targets of miR-449a-5p, miR-34b/c-5p and miR-21-5p were predicted by TargetScan […]

call_split

Defining the molecular basis of oncogenic cooperation between TAL1 expression and Pten deletion in T ALL using a novel pro T cell model system

2018
Leukemia
PMCID: 5886055
PMID: 29151585
DOI: 10.1038/leu.2017.328
call_split See protocol

[…] K-means clustering was performed using Multiple Experiment Viewer (http://mev.tm4.org). For the prediction of cis-regulatory features and cis-regulatory modules ‘i-cisTarget’ was used and for gene ontology enrichment analysis, Gorilla. […]

library_books

Association between increased visceral fat area and alterations in plasma fatty acid profile in overweight subjects: a cross sectional study

2017
PMCID: 5735636
PMID: 29258511
DOI: 10.1186/s12944-017-0642-z

[…] Pearson’s correlation coefficient was analyzed to find relationships between variables and partial correlation analysis was performed to adjust for the confounding factors. A heat map was created via Multiple Experiment Viewer (MeV) version 4.9.0 (http://www.tm4.org/) to visualize the relationships between variables. The outcomes are stated as the mean ± standard error (SE). The results were consi […]

library_books

Proteogenomic characterization and integrative analysis of glioblastoma multiforme

2017
Oncotarget
PMCID: 5722563
PMID: 29228611
DOI: 10.18632/oncotarget.21937

[…] http://www.ncbi.nlm.nih.gov/) and TCGA datasets (TCGA-IlluminaHiSeq and TCGA_GBM_Exp_U133a) from UCSC Genome Browser (https://genome-cancer.ucsc.edu/). Hierarchical clustering was performed using the multiple experiment viewer (MeV) 4.7.1 software (http://www.tm4.org/mev/).We used GO classifications (http://www.geneontology.org/) to evaluate the biological function of the changed genes in GBM thro […]

library_books

An analysis of 67 RNA seq datasets from various tissues at different stages of a model insect, Manduca sexta

2017
BMC Genomics
PMCID: 5645894
PMID: 29041902
DOI: 10.1186/s12864-017-4147-y

[…] oder (3.0.0) (https://github.com/TransDecoder), RSEM (1.2.29) [], BLAST+ (2.2.30) [], and tRNAscan-SE (1.3.1) [] were downloaded from their official sites and installed on a local supercomputer. MeV (Multiple Experiment Viewer 4.9.0, http://mev.tm4.org/) and Cluster 3.0 (by Michael B. Eisen) were installed in a local computer. […]


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MeV institution(s)
Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, MA, USA
MeV funding source(s)
Supported by a grant from the US National Cancer Institute, through its Informatics Technology for Cancer Research program (5U01CA151118).

MeV review

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Martin Abba

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Desktop
MeV is a java-based desktop application with extensive capability for array and RNAseq clustering, machine learning methods (SVM), statistical analysis (t-test, ANOVA, SAM, Rank Product, edgeR, Degseq, etc.), data mining and visualization tools in an easy-to-learn graphical user interface.