MGC specifications

Information


Unique identifier OMICS_01491
Name MGC
Alternative name Metagenomic Gene Caller
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for Metagenomic Gene Caller

MGC citation

library_books

Convergent Bacterial Microbiotas in the Fungal Agricultural Systems of Insects

2014
MBio
PMCID: 4251994
PMID: 25406380
DOI: 10.1128/mBio.02077-14

[…] All contigs in the community metagenomes binned to the family Enterobacteriaceae or genus Pseudomonas were separated, and genes were predicted from these contigs by using Prodigal () with the metagenomic gene caller option. BLASTN was used to map genes and contigs onto the reference Enterobacteriaceae and Pseudomonas genomes listed in (using nondefault parameters of -X 150, -q -1, -F F, a […]

MGC institution(s)
Department of Computer Science and Engineering, University of South Carolina, Columbia, SC, USA
MGC funding source(s)
This work is supported by the National Science Foundation under Grant No. DBI-0959427.

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