Protocols

MGDb specifications

Information


Unique identifier OMICS_28848
Name MGDb
Alternative name Mango Genome Database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Tayyaba

Publication for Mango Genome Database

MGDb citations

 (2)
library_books

Complete Genomic DNA Sequence of the East Asian Spotted Fever Disease Agent Rickettsia japonica

2013
PLoS One
PMCID: 3767692
PMID: 24039725
DOI: 10.1371/journal.pone.0071861

[…] in R. japonica genome DNA sequences, we used a sequence similarity search program, HMMER3 , based on hidden Markov models, and the previously identified RPE sequences (http://igs-server.cnrs-mrs.fr/mgdb/Rickettsia/) as a training data set. Rickettsial orthologs of the R. japonica genes with RPE-4, RPE-6, and RPE-7 were identified by reciprocal best hit using BLASTP (filtering expectation values […]

call_split

RickA Expression Is Not Sufficient to Promote Actin Based Motility of Rickettsia raoultii

2008
PLoS One
PMCID: 2440523
PMID: 18612416
DOI: 10.1371/journal.pone.0002582
call_split See protocol

[…] The sequences of the RickA proteins from 12 Rickettsia species, obtained from GenBank (http://www.ncbi.nlm.nih.gov/), RickBase (http://igs-server.cnrs-mrs.fr/mgdb/Rickettsia/) and our current work were used for phylogenetic inference. In a first step, a pairwise alignment of these sequences was carried out using the needle algorithm of emboss suite (http:/ […]

MGDb institution(s)
Sir Syed University of Engineering and Technology, Karachi, Pakistan

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