mGSV statistics

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Citations per year

Number of citations per year for the bioinformatics software tool mGSV
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Tool usage distribution map

This map represents all the scientific publications referring to mGSV per scientific context
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Associated diseases

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Popular tool citations

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mGSV specifications

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Unique identifier OMICS_11727
Name mGSV
Alternative name multi-Genome Synteny Viewer
Interface Web user interface, Application programming interface
Restrictions to use None
Input data A mandatory genome synteny data file is required to use mGSV along with an optional genome annotation data file.
Output data Tab-delimited text
Programming languages Javascript, PHP
Database management system MySQL
Computer skills Basic
Version 2.1
Stability No
Maintained No

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Publication for multi-Genome Synteny Viewer

mGSV citations

 (3)
library_books

Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae)

2016
Genome Biol Evol
PMCID: 4779604
PMID: 26739167
DOI: 10.1093/gbe/evv256

[…] icana. As sequence divergence is very high in Hydnora compared with these two plants, colinearity was visualized based on annotation, using Multi-Genome Synteny viewer (http://cas-bioinfo.cas.unt.edu/mgsv/index.php, last accessed January 11, 2016; ). Both the gene order and the gene orientation are nearly identical compared with Piper and Conopholis (). The only exception being the gene block of y […]

library_books

Genomic Characterization of the LEED..PEEDs, a Gene Family Unique to the Medicago Lineage

2014
PMCID: 4199706
PMID: 25155275
DOI: 10.1534/g3.114.011874

[…] mes were identified and visualized using MUMmer 3 software () with default parameters. Gene homology patterns within these regions were analyzed using GEvo (default parameters) () and visualized with mGSV software (), filtering out small syntenic regions (<500 bp) and joining consecutive syntenic regions within a single gene.LPs 2–13 from M. truncatula ssp. tricycla R108 were located on a single s […]

library_books

Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7

2014
BMC Genomics
PMCID: 4092221
PMID: 24973960
DOI: 10.1186/1471-2164-15-537

[…] an Epigenome Browser [] in the mm9 and hg19 assembly, respectively. Orthologous genes located at the murine domain borders were plotted at the corresponding location in the human genome employing the Multi-Genome Synteny Viewer (mGSV) []. […]


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mGSV institution(s)
Department of Biological Sciences, University of North Texas, Denton, TX, USA; The Texas Academy of Mathematics and Science, University of North Texas, Denton, TX, USA; Department of Computer Science and Engineering, University of North Texas, Denton, TX, USA
mGSV funding source(s)
NIH grant 1RC2HG005806-01; a Research Initiative Grant at University of North Texas; the Howard Hughes Medical Institute through the Precollege and Undergraduate Science Education Program; a TAMS research fellowship

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