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MHC2Pred specifications

Information


Unique identifier OMICS_06693
Name MHC2Pred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for MHC2Pred

MHC2Pred in publications

 (11)
PMCID: 4881492
PMID: 27153063
DOI: 10.3390/ijms17050666

[…] epitopes and was tested for high-affinity hla class ii peptide binding. it was found to compare well with several other web-accessible methods for hla class ii peptide-binding prediction, such as mhc2pred (support vector machine based method for prediction of promiscuous mhc class ii binding peptides)., oany et al. [] investigated a computational approach for the design of peptide vaccines […]

PMCID: 4654883
PMID: 26589500
DOI: 10.1186/s13073-015-0245-0

[…] another pssm approach is netmhcii/smm-align [], which was updated to use anns in 2009 []. other hla class ii epitope predictors are propred [], rankped [], tepitope [], svrmhc [], mhc2mil [] and mhc2pred., all of these tools have some predictors for the hla-dr locus. netmhcii, rankped and mhc2mil also provide predictions for hla-dq and dp. in general, the coverage of the dq and dp loci […]

PMCID: 4603527
PMID: 26512199
DOI: 10.4137/BBI.S29466

[…] the svm creates a hyperplane in the high-dimensional space of training data to classify them into different groups. svm has been used by a few servers for hla–peptide binding prediction including mhc2pred, multipred, svmhc,, prediction of peptide immunogenicity (popi), and kernel-based inter-allele peptide binding prediction system (kiss). the quantitative derivative of svm was implemented […]

PMCID: 3634821
PMID: 23637791
DOI: 10.1371/journal.pone.0061139

[…] using immuno-informatics prediction servers. each 15-mer peptide was submitted to the following servers, using default parameters: netmhc iipan , smm align , nn align , sturnolio , rankpep , mhc2pred (http://www.imtech.res.in/raghava/mhc2pred/), propred , and svmhc and analysed to derive a consensus nonamer for the binding core., in an effort to identify suitable homologs of momp […]

PMCID: 3607191
PMID: 23745018
DOI: 10.6026/97320630009315

[…] virally important immunogenic epitopes. algorithms have been developed to predict immunogenic peptides restricted to both mhc class i and ii. mhc class i and ii in silico tools include propred, mhc2pred, rankpep, svmhc, mhcpred, and mhc-bps, syfpeithi, bimas, iedb_ann, epijen, rankpep, hlapred, netctl and multipred, among others. these algorithms have been shown to be useful in identifying […]


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MHC2Pred institution(s)
Institute of Microbial Technology, Chandigarh, India

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