MI-Pack statistics

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MI-Pack specifications

Information


Unique identifier OMICS_04676
Name MI-Pack
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MI-Pack

MI-Pack in publications

 (10)
PMCID: 5666749
PMID: 28956853
DOI: 10.3390/ijms18102067

[…] values 343.08236 and 291.19366 in stressed plants as compared to the controls., selected important metabolites were introduced into metaboanalyst online database (http://www.metaboanalyst.ca) and mi-pack software, and the all obtained pathways are reported in . among these pathways, those with p < 0.05 from metaboanalyst and with coverage value ≥0.1 from mi-pack were selected and are shown […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] biochemical reactions between the candidate structures to assign higher probabilities to compounds that form substrate/product pairs within the same sample. metabolite identification package (mi-pack) [], implemented in python, calculates differences in mass between all molecular formulas annotated from hrms and compares them to known substrate/product pairs from kegg, but matches […]

PMCID: 5426011
PMID: 28516140
DOI: 10.1016/j.dib.2017.04.039

[…] the peak matrix consisted of a multivariate dataset that recorded all the peaks detected for each biological replicate., the peak mass list, along with peak intensities, were submitted to the mi-pack software package to identify. for each given accurate mass within the peak list, the correct number of empirical formulae were calculated by implication of seven ‘golden rules’ . it must […]

PMCID: 4959074
PMID: 26994075
DOI: 10.1128/AEM.00275-16

[…] matlab script with a false discovery rate of 5% to correct for multiple hypothesis testing ()., for both lipid data sets, peaks were annotated and putative empirical formulae were calculated using mi-pack software (), with searches of the kegg (http://www.genome.jp/kegg/) and lipid maps (http://www.lipidmaps.org/) databases (). additional ms/ms data were acquired as described […]

PMCID: 4844948
PMID: 27113113
DOI: 10.1038/srep25125

[…] in the pca scores plots., in an attempt to annotate those mass spectral peaks that differ significantly between the long-day and short-day conditions, empirical formula(e) were assigned using mi-pack software. next, utilizing the kegg database, the transformation mapping algorithm in mi-pack was used to assign putative metabolite names to these empirical formulae. in total, 112 m/z peaks […]


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