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Protocols

MI-Pack specifications

Information


Unique identifier OMICS_04676
Name MI-Pack
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MI-Pack

MI-Pack citations

 (15)
library_books

Lipidomics Unravels the Role of Leaf Lipids in Thyme Plant Response to Drought Stress

2017
Int J Mol Sci
PMCID: 5666749
PMID: 28956853
DOI: 10.3390/ijms18102067

[…] nt study, after selecting m/z values corresponding to important metabolites, the list of metabolites was arranged by two databases: the HMDB online database (available online: http://www.hmdb.ca) and MI-Pack software []. The results are summarized in and some overlap was observed between these two databases. […]

library_books

Navigating freely available software tools for metabolomics analysis

2017
Metabolomics
PMCID: 5550549
PMID: 28890673
DOI: 10.1007/s11306-017-1242-7

[…] or the analysis of LC–MS and DIMS metabolomics data, providing preprocessing, statistical analysis and annotation. Like Workflow4metabolomics, Galaxy-M includes installations of XCMS and CAMERA, with MI-PACK (Weber and Viant ) additionally available. Also included are a number of imputation, normalisation and filtering methods.XCMS Online (Tautenhahn et al. ) is an online implementation of XCMS (S […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] Metabolic Network Exchange Database; MFSearcher: Molecular Formula Searcher; MIA: Mass Isotopolome Analyzer; MID: mass isotopomer distributions; MINE: Metabolic In Silico Network Expansion Databases; MI-Pack: Metabolite Identification Package; MMCD: Madison Metabolomics Consortium Database; MMSAT: Metabolite Mass Spectrometry Analysis Tool; MoNA: MassBank of North America; MPA-RF: Model Population […]

library_books

Comprehensive list of metabolites measured by DI FTICR mass spectrometry in thyme plants with contrasting tolerance to drought

2017
PMCID: 5426011
PMID: 28516140
DOI: 10.1016/j.dib.2017.04.039

[…] The peak mass list, along with peak intensities, were submitted to the Mi-Pack software package to identify. For each given accurate mass within the peak list, the correct number of empirical formulae were calculated by implication of seven ‘golden rules’ . It must be n […]

library_books

Wolbachia Modulates Lipid Metabolism in Aedes albopictus Mosquito Cells

2016
Appl Environ Microbiol
PMCID: 4959074
PMID: 26994075
DOI: 10.1128/AEM.00275-16

[…] on intensity profiles, retention times, and MS/MS profiles, but here we focus on manually curated annotations (see Tables S15 and S16 in the supplemental material) among the 272 species annotated by MI-Pack as PC, PE, PS, or their diacyl- or lysoforms in the LC-MS data set. The DIMS data set contains 136 PC, PE, and PS signals, but there are a number of mixed species and these are more challengin […]

call_split

Metabolomics reveals an involvement of pantothenate for male production responding to the short day stimulus in the water flea, Daphnia pulex

2016
Sci Rep
PMCID: 4844948
PMID: 27113113
DOI: 10.1038/srep25125
call_split See protocol

[…] opedia of Genes and Genomes) compound names were assigned, where possible, to the significantly changing m/z peaks using the transformation mapping algorithm in the Metabolite Identification Package (MI-Pack). Briefly, MI-Pack calculates accurate m/z values for common negative ions ([M-H]−, [M + 35Cl]−, [M + 37Cl]−, [M + Acetate(Ac)]−, [M + K-2H]− and [M + Na-2H]−) and positive ions ([M + H]+, [M  […]

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