MIBPB specifications

Information


Unique identifier OMICS_21861
Name MIBPB
Alternative names Matched Interface and Boundary Based Poisson-Boltzmann Solver, MIBPB-I, MIBPB-II, MIBPB-III
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Guowei Wei
  • person_outline Bao Wang

Additional information


http://www.math.msu.edu/~wei/PAPER/p127.pdf http://www.math.msu.edu/~wei/PAPER/p128.pdf http://www.math.msu.edu/~wei/PAPER/p130.pdf Homepage of the web application: http://weilab.math.msu.edu/MIBPB/

Information


Unique identifier OMICS_21861
Name MIBPB
Alternative names Matched Interface and Boundary Based Poisson-Boltzmann Solver, MIBPB-I, MIBPB-II, MIBPB-III
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Guowei Wei
  • person_outline Bao Wang

Additional information


http://www.math.msu.edu/~wei/PAPER/p127.pdf http://www.math.msu.edu/~wei/PAPER/p128.pdf http://www.math.msu.edu/~wei/PAPER/p130.pdf Homepage of the web application: http://weilab.math.msu.edu/MIBPB/

Publications for Matched Interface and Boundary Based Poisson-Boltzmann Solver

MIBPB citations

 (2)
library_books

On the energy components governing molecular recognition in the framework of continuum approaches

2015
Front Mol Biosci
PMCID: 4429657
PMID: 25988173
DOI: 10.3389/fmolb.2015.00005

[…] clude: DelPhi (Nicholls and Honig, ; Rocchia et al., , ), PB solver implemented in Amber (Wang and Luo, ; Wang et al., ), APBS (Holst et al., ; Baker et al., ; Lu et al., ), Charmm (Brooks et al., ), MIBPB (Chen et al., ), ZAP (Grant et al., ; Word and Nicholls, ) and many others. With exception of Gaussian-based DelPhi (Li et al., ), the rest of the approaches consider two phase model: the solute […]

library_books

APBSmem: A Graphical Interface for Electrostatic Calculations at the Membrane

2010
PLoS One
PMCID: 2947494
PMID: 20949122
DOI: 10.1371/journal.pone.0012722

[…] finite difference and finite element methods –. Today, there are several popular software packages available to perform PB calculations such as DelPhi , the Adaptive Poisson-Boltzmann Solver (APBS) , MIBPB , ZAP , and the PBEQ module in CHARMM . Unfortunately, there is a dearth of programs that allow researchers to carry out these calculations at or near a membrane. Nonetheless, over the last two […]

MIBPB institution(s)
Department of Mathematics, Michigan State University, East Lansing, MI, USA; Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, USA
MIBPB funding source(s)
Supported in part by NSF grants DMS-0616704 and CCF-0936830; and NIH grants GM-090208 and; CA-127189.

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