MICA-aligner specifications


Unique identifier OMICS_08621
Name MICA-aligner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Reference sequences in the commonly known FASTA format and short reads in FASTA/FASTQ format (in uncompressed or GZIP format)
Output data SAM/BAM format
Operating system Unix/Linux
Programming languages C++
Parallelization CUDA
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Tak-Wah Lam <>

MICA-aligner article

MICA-aligner institution(s)
HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory, The University of Hong Kong, Hong Kong

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