MICADo statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MICADo

Tool usage distribution map

This map represents all the scientific publications referring to MICADo per scientific context
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Associated diseases


Popular tool citations

chevron_left De novo mutation detection SNP detection SNV detection Low-frequency SNV detection Indel detection chevron_right
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MICADo specifications


Unique identifier OMICS_27043
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The reference sequences for a gene of interest and several read sets corresponding to the gene panel sequencing of a cohort of patients.
Input format FASTQ+FASTA/TSV
Output format JSON,TSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
scipy, appnope, biopython, decorator, gnureadline, ipython, ipython-genutils, msgpack-python, networkx, numexpr, numpy, pandas, path.py, pexpect, pickleshare, ptyprocess, pyparsing, python-dateutil, pytz, simplegeneric, six, traitlets, wsgiref, simplejson, python-Levenshtein, sklearn
Maintained Yes




No version available



  • person_outline Justine Rudewicz
  • person_outline Hayssam Soueidan
  • person_outline Macha Nikolski

Publication for MICADo

MICADo citations


An illustrated key to the genera of Eumeninae from China, with a checklist of species (Hymenoptera, Vespidae)

PMCID: 5904483
PMID: 29674892
DOI: 10.3897/zookeys.740.22654

[…] s labiatus flavoniger Giordani Soika, 1941 Eumenes labiatus labiatus Giordani Soika, 1941 Eumenes labiatus sinicus Giordani Soika, 1941 Eumenes mediterraneus manchurianus Giordani Soika, 1971 Eumenes micado Cameron, 1904 (Kim and Yoon (2001) state that the record is very doubtful) Eumenes multipictus de Saussure, 1855 Eumenes nigriscutatus Zhou, Chen & Li, 2012 Eumenes pedunculatus pedunculatus (P […]


Alignment free sequence comparison: benefits, applications, and tools

Genome Biol
PMCID: 5627421
PMID: 28974235
DOI: 10.1186/s13059-017-1319-7

[…] ional mapping-based detection, they seem to be ideally suited for clinical applications, where sequencing data from a large number of individuals need to be processed in a timely manner. For example, MICADo analyzes third-generation sequencing reads for each patient sample within the context of the data of the whole cohort in order to capture patient-specific mutations [] and ChimeRScope predicts […]


Ethno entomological observations from North South Korea (officially known as the “Democratic People’s Republic of South Korea”)

PMCID: 3554493
PMID: 23324196
DOI: 10.1186/1746-4269-9-7

[…] control, lists 14 species of insects as edible, foremost the acridid orthopterans Oxya velox and Acrida turrita, the crickets Homeogryullus japonicus and Gryllotalpa africana, the locust Gompsocleis micado and the bombycid moth Bombyx mori. Interestingly, the list also contains water beetles of the families Hydrophilidae (Stethoxus acuminatus) and Dytiscidae (Cybister japonicus). Numerous dead co […]

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MICADo institution(s)
Centre de BioInformatique de Bordeaux, University of Bordeaux, Bordeaux, France; Laboratoire Bordelais de Recherche en Informatique, Centre National de la Recherche Scientifique, University of Bordeaux, Bordeaux, France; Bergonié Cancer Institute, Institut National de la Santé et de la Recherche Médicale U1218, University of Bordeaux, Bordeaux, France; Karolinska Institute and University Hospital, Stockholm, Sweden
MICADo funding source(s)
Supported in part by the SIRIC BRIO; by grants from the Swedish Cancer Society, Knut and Alice Wallenberg’s fund, the research funds at Radiumhemmet, Karolinska Institutet and Stockholm County Council, BRECT and ALF.

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