MICRA pipeline

MICRA specifications

Information


Unique identifier OMICS_25468
Name MICRA
Alternative name Microbial Identification and Characterization through Reads Analysis
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Some reads and the sequencing technology.
Input format FASTQ, ZIP, GZ
Biological technology Illumina
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ségolène Caboche <>

Information


Unique identifier OMICS_25468
Name MICRA
Alternative name Microbial Identification and Characterization through Reads Analysis
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ségolène Caboche <>

Publication for Microbial Identification and Characterization through Reads Analysis

MICRA citation

2013
PMCID: 3853067

[…] recession, alveolar bone loss, and tooth mobility. however, occasionally these normally oral pathogens can cause infections at other sites in the body. we present the genome sequence of parvimonas micra strain a293, a smooth parvimonas micra strain isolated from an abdominal abscess from a patient at barts hospital, london, united kingdom., parvimonas micra, formerly known […]

MICRA institution(s)
University of Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019-UMR 8204-CIIL-Centre d’Infection et d’Immunité de Lille, Lille, France; PEGASE-Biosciences, Institut Pasteur de Lille, Lille, France
MICRA funding source(s)
Supported by University of Lille, Institut Pasteur de Lille, and the Gènes Diffusion company.

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