MID specifications

Unique identifier:
OMICS_10997
Software type:
Package/Module
Restrictions to use:
None
Output data:
The output files contain detailed alignments of each unmapped read with MIs and a list of unique MIs.
Computer skills:
Advanced
Requirements:
GCC, C++
Name:
Micro-Inversion Detector
Interface:
Command line interface
Input data:
BAM file of unmapped reads
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

versioning

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MID support

Maintainer

  • Remo Rohs <>

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Credits

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Publications

Institution(s)

State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, and Center for Quantitative Biology, Peking University, Beijing, China; Department of Bioengineering, University of Illinois, Urbana, IL, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, IL, USA; Division of Applied Mathematics, Brown University, Providence, RI, USA

Funding source(s)

This work was supported in part by the National Key Technology Research and Design Program of China [2012BAI06B02], the National Nature Science Fund of China [91231119 and 61131003], the National Institutes of Health [HG007352 and CA182360], the National Science Foundation [1054309 and 1262575] and the Foundation of the China Scholarship Council (CSC).

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