MID specifications

Unique identifier:
Software type:
Restrictions to use:
Output data:
The output files contain detailed alignments of each unmapped read with MIs and a list of unique MIs.
Computer skills:
GCC, C++
Micro-Inversion Detector
Command line interface
Input data:
BAM file of unmapped reads
Operating system:


tutorial arrow
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

MID support


  • Remo Rohs <>


tutorial arrow
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.


tutorial arrow
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship



State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, and Center for Quantitative Biology, Peking University, Beijing, China; Department of Bioengineering, University of Illinois, Urbana, IL, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, IL, USA; Division of Applied Mathematics, Brown University, Providence, RI, USA

Funding source(s)

This work was supported in part by the National Key Technology Research and Design Program of China [2012BAI06B02], the National Nature Science Fund of China [91231119 and 61131003], the National Institutes of Health [HG007352 and CA182360], the National Science Foundation [1054309 and 1262575] and the Foundation of the China Scholarship Council (CSC).

User review

tutorial arrow
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools