MiStrVar specifications

Information


Unique identifier OMICS_25717
Name Micro Structural Variant Caller
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A reference genome and a file from paired-end sequencing.
Input format FASTA+FASTQ,SAM,BAM
Output data Three files specifying inversions, duplications, indels, and SNVs detected in the dataset, the pairwise alignment for inversions and duplications and reads supporting each prediction.
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements G++
Maintained Yes

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Maintainers


  • person_outline Cenk Sahinalp <>
  • person_outline Alex Gawronski <>
  • person_outline Yen-Yi Lin <>

MiStrVar article

MiStrVar institution(s)
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada; Department of Computer Science, Indiana University, Bloomington, IN, USA; Department of Surgery, Indiana University, School of Medicine, Indianapolis, IN, USA
MiStrVar funding source(s)
Supported by NIGMS/NIH Grant No R01 GM103725-04, and the NSERC Discovery Frontiers Grant on the Cancer Genome Collaboratory.

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