MiStrVar specifications


Unique identifier OMICS_25717
Name Micro Structural Variant Caller
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A reference genome and a file from paired-end sequencing.
Output data Three files specifying inversions, duplications, indels, and SNVs detected in the dataset, the pairwise alignment for inversions and duplications and reads supporting each prediction.
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements G++
Maintained Yes



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  • person_outline Cenk Sahinalp <>
  • person_outline Alex Gawronski <>
  • person_outline Yen-Yi Lin <>

MiStrVar article

MiStrVar institution(s)
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada; Department of Computer Science, Indiana University, Bloomington, IN, USA; Department of Surgery, Indiana University, School of Medicine, Indianapolis, IN, USA
MiStrVar funding source(s)
Supported by NIGMS/NIH Grant No R01 GM103725-04, and the NSERC Discovery Frontiers Grant on the Cancer Genome Collaboratory.

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