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Microarray data analysis bioinformatics software tools

Microarray is a powerful high-throughput technology for analyzing the expression state of a very large number of genes or proteins within several complex samples simultaneously. DNA and RNA microarrays also known as gene chips have been used in a…

Microarray applications

Most recent bioinformatics tools

COKGEN
Desktop

COKGEN

Identifies copy number variations (CNVs) from raw copy number. COKGEN consists…

Identifies copy number variations (CNVs) from raw copy number. COKGEN consists in a configurable platform for CNV identification that allows users to: (1) adjust the parameters of our default…

Pigeons
Desktop

Pigeons Photographically InteGrated En-suite for the OligoNucleotide Screening

Allows users to input and analyse microarray data from the Xspecies microarray…

Allows users to input and analyse microarray data from the Xspecies microarray approach. Pigeons employs quantile normalization to address the comparability of intensity distributions between arrays.…

GeMSE
Desktop

GeMSE GenoMetric Space Explorer

Allows analysis and visualization of interval-based genomic data. GeMSE…

Allows analysis and visualization of interval-based genomic data. GeMSE implements a set of abstractions for data analysis, exploration and visualization. The software supports primitives for data…

BCLUST
Desktop

BCLUST

Allows users to check genes clusters’ trustworthiness. BCLUST uses a parametric…

Allows users to check genes clusters’ trustworthiness. BCLUST uses a parametric bootstrap resampling approach to include information relative to variations in gene expression levels. It permits to…

Most popular analytical software

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VENNY
Web

VENNY

Allows comparison of lists with Venn Diagrams. VENNY is a web-server,…

Allows comparison of lists with Venn Diagrams. VENNY is a web-server, consisting in a single standard html file that can be used off-line.

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

ASCAT
Desktop

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

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kmerHMM
Desktop

kmerHMM

Motif Discovery on Protein Binding Microarray (PBM) data using Hidden Markov…

Motif Discovery on Protein Binding Microarray (PBM) data using Hidden Markov Model and Belief Propagation.

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