Microarray data analysis bioinformatics software tools

Microarray is a powerful high-throughput technology for analyzing the expression state of a very large number of genes or proteins within several complex samples simultaneously. DNA and RNA microarrays also known as gene chips have been used in a…

Microarray applications

Most recent bioinformatics tools

GeneRank
Algorithm

GeneRank

Combines connectivity and expression data to produce a robust summary of an…

Combines connectivity and expression data to produce a robust summary of an experiment. GeneRank is based on the PageRank algorithm and increase its capabilities to rank genes in microarray…

SGMIC
Desktop

SGMIC Simulated annealing and Genetic Maximal Information Coefficient

Serves for the process of genetic algorithm, and the simulation of annealing.…

Serves for the process of genetic algorithm, and the simulation of annealing. SGMIC simplifies the calculation method and allows users to evaluate Maximal Information Coefficient (MIC) values.

RapidMic
Desktop

RapidMic

Represents a rapid maximal information-based nonparametric exploration tool.…

Represents a rapid maximal information-based nonparametric exploration tool. RapidMic is based on parallel computing for the discovery of relationships and associations in large-scale datasets. This…

SuperMIC
Desktop

SuperMIC Super Maximal Information Coefficient

Represents a technique for large scale biological datasets using MapReduce…

Represents a technique for large scale biological datasets using MapReduce framework. SuperMIC is a uniform accelerating cluster based system. It extends current software algorithm into parallel…

Most popular analytical software

VENNY
Web

VENNY

An interactive tool for comparing lists with Venn Diagrams.

An interactive tool for comparing lists with Venn Diagrams.

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

ASCAT
Desktop

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

G T A T C G C T A
kmerHMM
Desktop

kmerHMM

Motif Discovery on Protein Binding Microarray (PBM) data using Hidden Markov…

Motif Discovery on Protein Binding Microarray (PBM) data using Hidden Markov Model and Belief Propagation.

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