Microarray data analysis bioinformatics software tools

Microarray is a powerful high-throughput technology for analyzing the expression state of a very large number of genes or proteins within several complex samples simultaneously. DNA and RNA microarrays also known as gene chips have been used in a…

Microarray applications

Microarray data analysis bioinformatics software tools

Most Recent Tools

RGCCA
Desktop

RGCCA Regularized and Sparse Generalized Canonical Correlation Analysis

Permits the analysis of several sets of variables (blocks) observed on the same…

Permits the analysis of several sets of variables (blocks) observed on the same group of individuals. RGCCA is a multiblock data analysis that extracts the information which is shared by the J-blocks…

GARBAN
Desktop

GARBAN Genomic Analysis and Rapid Biological ANnotation

Permits to analyse and compare multiple datasets from DNA microarrays and…

Permits to analyse and compare multiple datasets from DNA microarrays and proteomic studies. GARBAN also allows to manage projects and analyses. Thanks to the implementation of cluster function, it…

CLENCH
Desktop

CLENCH CLuster ENriCHment

Retrieves Gene Ontology (GO) annotations for Arabidopsis thaliana genes. CLENCH…

Retrieves Gene Ontology (GO) annotations for Arabidopsis thaliana genes. CLENCH calculates functional enrichment in gene groups derived from the analysis of gene expression data. It reports some…

L2L
Dataset

L2L

Provides lists of differentially expressed genes. L2L was constructed by…

Provides lists of differentially expressed genes. L2L was constructed by compiling data from published mammalian microarray studies. It contains a set of lists for each of the three organizing…

Most Popular Tools

VENNY
Web

VENNY

An interactive tool for comparing lists with Venn Diagrams.

An interactive tool for comparing lists with Venn Diagrams.

ASCAT
Desktop

ASCAT

A tool for accurate dissection of genome-wide allele-specific copy number in…

A tool for accurate dissection of genome-wide allele-specific copy number in tumors.

G T A T C G C T A
kmerHMM
Desktop

kmerHMM

Motif Discovery on Protein Binding Microarray (PBM) data using Hidden Markov…

Motif Discovery on Protein Binding Microarray (PBM) data using Hidden Markov Model and Belief Propagation.

Genedata…
Desktop

Genedata Expressionist

A comprehensive, enterprise software solution that manages, analyzes, and…

A comprehensive, enterprise software solution that manages, analyzes, and visualizes massive amounts of raw data from next-generation sequencing, microarray and other genomic technologies.

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