Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Microarray repositories | Gene expression data analysis

Gene expression microarray experiments have generated large amounts of data that are collected in public repositories (primary databases).

G T A T C G C T A
ArrayExpress
Dataset

ArrayExpress

A database of functional genomics experiments that can be queried and the data…

A database of functional genomics experiments that can be queried and the data downloaded. ArrayExpress includes data generated by sequencing or array-based technologies. Data are submitted by users…

A A A
SMD
Dataset

SMD Stanford Microarray Database

A research tool and archive that allows hundreds of researchers worldwide to…

A research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology. SMD supports most major microarray platforms,…

G T A T C G C T A
GEO
Dataset

GEO Gene Expression Omnibus

An international public repository for high-throughput microarray and…

An international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community. The resource supports archiving of raw…

A A A
TMAD
Dataset

TMAD Stanford Tissue MicroArray Database

Provides tools to assist the histologist with array block design and…

Provides tools to assist the histologist with array block design and construction. TMAD is an online resource that equips researchers with tissue microarray design tools, image scoring and annotation…

A A A
FlowerNet
Dataset

FlowerNet

Permits analysis of genes involved in anther and pollen development in order to…

Permits analysis of genes involved in anther and pollen development in order to discover new players during development. FlowerNet has broader application in the characterization of all genes…

A A A
PEPR
Dataset

PEPR Public Expression Profiling Resource

Provides centralized Affymetrix expression profiling data to the public…

Provides centralized Affymetrix expression profiling data to the public research community, typically before publication in primary research papers. Data released through PEPR are generated within a…

A A A
RAD
Dataset

RAD RNA Abundance Database

Provides a comprehensive MIAME-supportive infrastructure for gene expression…

Provides a comprehensive MIAME-supportive infrastructure for gene expression data management and makes extensive use of ontologies. Specific details on protocols, biomaterials, study designs, etc.…

A A A
LCB-DWH
Dataset

LCB-DWH Linnaeus Centre for Bioinformatics Data Warehouse

A web-based infrastructure for reliable and secure microarray gene expression…

A web-based infrastructure for reliable and secure microarray gene expression data management and analysis that provides an online service for the scientific community. The LCB-DWH is an effort…

A A A
Cassava Online…
Dataset

Cassava Online Archive

Provides expressed sequence tags (ESTs) currently available from NCBI…

Provides expressed sequence tags (ESTs) currently available from NCBI (Genbank/EMBL/DDBJ) and cassava mRNA sequences and their annotations. Cassava Online Archive simplifies the cassava genomics…

A A A
PLANdbAffy
Dataset

PLANdbAffy

A database that contains the results of the alignment of probe sequences from…

A database that contains the results of the alignment of probe sequences from five Affymetrix expression microarrays to the human genome. In the textual part of the database interface we summarize…

A A A
dbERGE
Dataset

dbERGE Database of Experimental Results on Gene Expression

Houses both detailed experimental data and summary of experimental results and…

Houses both detailed experimental data and summary of experimental results and provides a convenient query interface and display options for quick retrieval of interesting data. Its applications…

A A A
celegansprobe
Dataset

celegansprobe

Probes sequence for microarrays of type celegans. celegansprobe is an R package…

Probes sequence for microarrays of type celegans. celegansprobe is an R package available on Bioconductor.

A A A
canineprobe
Dataset

canineprobe

Probes sequence for microarrays of type canine2. canineprobe is an R package…

Probes sequence for microarrays of type canine2. canineprobe is an R package available on Bioconductor.

A A A
canine.db
Dataset

canine.db

Contains mappings between a manufacturer’s identifiers and manufacturers…

Contains mappings between a manufacturer’s identifiers and manufacturers accessions. canine.db is an R package available on Bioconductor.

A A A
bsubtilisprobe
Dataset

bsubtilisprobe

Probes sequence for microarrays of type bsubtilis. bsubtilisprobe is a module…

Probes sequence for microarrays of type bsubtilis. bsubtilisprobe is a module created by the package AnnotationForge.

FDb.InfiniumMet…
Dataset

FDb.InfiniumMethylation.hg

Offers a compilation of HumanMethylation27 and HumanMethylation450 annotations.

Offers a compilation of HumanMethylation27 and HumanMethylation450 annotations.

ecoliprobe
Dataset

ecoliprobe

Provides probe sequence for microarrays of type Escherichia coli. ecoliprobe…

Provides probe sequence for microarrays of type Escherichia coli. ecoliprobe was automatically constructed by the AnnotationForge package.

A A A
ecoli.db
Dataset

ecoli.db

Provides different types of maps concerning a manufacturer’s identifiers and…

Provides different types of maps concerning a manufacturer’s identifiers and manufacturers accessions related to bacteria (Escherichia coli).

A A A
drosophilaprobe
Dataset

drosophilaprobe

Gathers information on sequences for microarrays related to insect…

Gathers information on sequences for microarrays related to insect (drosophila). The drosophilaprobe data are generated by the package AnnotationForge.

A A A
cottonprobe
Dataset

cottonprobe

Gathers information on sequences for microarrays related to cotton. The…

Gathers information on sequences for microarrays related to cotton. The cottonprobe data are generated by the package AnnotationForge.

A A A
clariomdhumantr…
Dataset

clariomdhumantranscriptcluster.db

Provides different types of maps concerning a manufacturer’s identifiers and…

Provides different types of maps concerning a manufacturer’s identifiers and manufacturers accessions related to human.

A A A
clariomdhumanpr…
Dataset

clariomdhumanprobeset.db

Provides different types of maps concerning common gene symbol identifiers and…

Provides different types of maps concerning common gene symbol identifiers and manufacturer identifiers.

A A A
citrusprobe
Dataset

citrusprobe

Gathers information on sequences for microarrays related to citrus. The…

Gathers information on sequences for microarrays related to citrus. The citrusprobe data are generated by the package AnnotationForge.

A A A
chickenprobe
Dataset

chickenprobe

Gathers information on sequences for microarrays related to chicken. The…

Gathers information on sequences for microarrays related to chicken. The chickenprobe data are generated by the package AnnotationForge.

A A A
chicken.db
Dataset

chicken.db

Provides several types of information about the chicken platform.

Provides several types of information about the chicken platform.

A A A
bovineprobe
Dataset

bovineprobe

Furnishes a R package gathering probe sequence for microarrays of bovine.…

Furnishes a R package gathering probe sequence for microarrays of bovine. bovineprobe provides information such as x et y coordinate on the array or probe interrogation position.

A A A
bovine.db
Dataset

bovine.db

Gathers data about bovine annotation. Bovine.db is a R package that compiles…

Gathers data about bovine annotation. Bovine.db is a R package that compiles information from public databases displayed into 22 R objects.

A A A
barley1probe
Dataset

barley1probe

Provides a R package that constitutes a repository containing probe sequence…

Provides a R package that constitutes a repository containing probe sequence for microarrays of barley1. barley1probe furnishes information on probe sequence, its x et y coordinate on the array, the…

A A A
ath1121501probe
Dataset

ath1121501probe

Provides a repository of probes from Arabidopsis thaliana generated by…

Provides a repository of probes from Arabidopsis thaliana generated by AnnotationForge. Ath1121501probe includes information about probe sequence, its x et y coordinate on the array, the Affymetrix…

A A A
hwgcod.db
Dataset

hwgcod.db

Provides a R package compiling annotation data from over 55000 human whole…

Provides a R package compiling annotation data from over 55000 human whole genome bioarray collected from public datasets.

A A A
h20kcod.db
Dataset

h20kcod.db

Provides a repository of annotation about UniSet Human 20k I Bioarray. h20kcod…

Provides a repository of annotation about UniSet Human 20k I Bioarray. h20kcod is a R package that gathers public data.

A A A
NABIC…
Dataset

NABIC Microarray

Provides information about gene expression profiles identified in the…

Provides information about gene expression profiles identified in the microorganism, plants, and animals. NABIC Microarray provides three major functions such as microarray search, viewer and…

A A A
Amazonia!
Dataset

Amazonia!

Provides a gene-centered database of human gene expression. Amazonia! is an…

Provides a gene-centered database of human gene expression. Amazonia! is an atlas that gathers a selection of publicly available transcriptome datasets which can be consulted via thematic pages. The…

A A A
drosophila.db
Dataset

drosophila.db

Provides different types of maps concerning a manufacturer’s identifiers and…

Provides different types of maps concerning a manufacturer’s identifiers and manufacturers accessions related to insect (drosophila).

A A A
clariomsrattran…
Dataset

clariomsrattranscriptcluster.db

Provides different types of maps concerning a manufacturer’s identifiers and…

Provides different types of maps concerning a manufacturer’s identifiers and manufacturers accessions related to rat.

A A A
clariomsmousetr…
Dataset

clariomsmousetranscriptcluster.db

Provides different types of maps concerning a manufacturer’s identifiers and…

Provides different types of maps concerning a manufacturer’s identifiers and manufacturers accessions related to mouse.

A A A
ath1121501.db
Dataset

ath1121501.db

Gathers arabidopsis ATH1-21501 genome array annotation data. Ath1121501.db is a…

Gathers arabidopsis ATH1-21501 genome array annotation data. Ath1121501.db is a R package containing data extracted from public datasets.

A A A
ag.db
Dataset

ag.db

Gathers annotated information about Affymetrix Arabidopsis Genome Array. ag.db…

Gathers annotated information about Affymetrix Arabidopsis Genome Array. ag.db is an R package containing 19 objects compiled from public repositories.

A A A
DNA Microarray…
Dataset

DNA Microarray Database

Gathers differential expression profiles of genes expressed in neonatal brains…

Gathers differential expression profiles of genes expressed in neonatal brains and adult spleen and liver of 129X1/SvJ and C57BL/6J strains of mice. DNA Microarray Database can assist researchers in…

A A A
ARTRA DB
Dataset

ARTRA DB Arabidopsis Transcriptome and DNA MicroArray Database

Provides information about Arabidopsis thaliana sequence. ARTRA DB contains…

Provides information about Arabidopsis thaliana sequence. ARTRA DB contains more than 250 000 transcripts sequences of Arabidopsis from Expression Sequence Tags (ESTs).

CancerMA
Dataset

CancerMA

An integrated bioinformatic analytical pipeline to automate the identification…

An integrated bioinformatic analytical pipeline to automate the identification of novel candidate cancer markers/targets by means of analysing the expression of user-supplied gene lists across a…

A A A
UNC Microarray Database
Dataset

UNC Microarray Database University of North Carolina Microarray Database

Provides the service for microarray data storage, retrieval, analysis, and…

Provides the service for microarray data storage, retrieval, analysis, and visualization. Access to non-public data is limited to registered University of North Carolina - Chapel Hill researchers and…

A A A
MicroGen
Dataset

MicroGen

Facilitates workflow management of spotted microarray experiment production,…

Facilitates workflow management of spotted microarray experiment production, provides an efficient way to gather complete experimental information, and supports collaborative work. In fact, thanks to…

A A A
MycoRegNet
Dataset

MycoRegNet

An online accessible, user-friendly platform dedicated to the biomedical…

An online accessible, user-friendly platform dedicated to the biomedical researcher, who is interested in the regulation of gene expression in the human pathogen M. tuberculosis. MycoRegNet's…

A A A
Genopolis
Dataset

Genopolis

Provides a resource that allows different groups performing microarray…

Provides a resource that allows different groups performing microarray experiments related to a common subject to create a common coherent knowledge base and to analyse it. The Genopolis database has…

A A A
MUSC DNA Microarray Database
Dataset
Related Websites
Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.