Obsolete

Retrieves data from different microarray databases using MAGE-ML and for combining microarray data with breast cancer image analysis and clinical data for correlation studies. MAGE-ML provides the necessary data integration to move microarray research from basic biological sciences to clinical applications. The framework has been used to develop a testbed integrated database application to identify genomic and imaging markers for diagnosis of breast cancer.

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MAGE-ML versioning

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MAGE-ML classification

MAGE-ML specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Java
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced

Credits

Publications

  • (Tjandra et al., 2003) An XML message broker framework for exchange and integration of microarray data. Bioinformatics.
    PMID: 14512357

Institution(s)

UCSF Department of Radiology, San Francisco, CA, USA; Harvard Center for Neurodegeneration and Repair (HCNR), Harvard Medical School, Boston, MA, USA; Department of Radiology, Brigham & Women Hospital, Harvard Medical School, Boston, MA, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA; Carol Franc Buck Breast Care Center, University of California, San Francisco, CA, USA; Department of Surgery, School of Medicine, University of California, San Francisco, CA, USA

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