Gathers oligonucleotide microarray probe sequences, including those not covered by commercial catalog arrays. OligoArrayDB intends to provide tools for any transcriptome analysis on sequenced organisms, in conjunction with custom oligonucleotide microarray fabrication. The database contains probe sets for more than 600 organisms from archaea to eukaryotes.
Assists users in evaluating human gut microbiota. HuGChip is a phylogenic microarray, generated thanks to the PhylArray software, which encompasses 8x15k probes with three probe replicates. The database includes explorative probes with the aim of permitting the detection of unknown bacteria without strong taxonomic evidences. Moreover, it authorizes the analysis of over 16 different samples per run, in order to decrease costs as well as limiting inter microarray bias.
An online resource for a comprehensive phylogenetic oligonucleotide probe database. PhylOPDb provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes. Such probes set or subset could be used to globally monitor known and unknown prokaryotic communities through various techniques including DNA microarrays, polymerase chain reaction (PCR), fluorescent in situ hybridization (FISH), targeted gene capture or in silico rapid sequence identification.
Provides a repository of probes from Arabidopsis thaliana generated by AnnotationForge. Ath1121501probe includes information about probe sequence, its x et y coordinate on the array, the Affymetrix probe set name, its probe interrogation position and the target strandedness.
Offers data from were obtained from PMPj. PMPj-Blast is a database of nucleotide sequences of Expressed Sequence tags (ESTs), cDNAs and oligo DNA microarray probes for Lotus japonicus and Arabidopsis Thaliana. It provides two ways to search: AGI or FASTA.
Provides a R package that constitutes a repository containing probe sequence for microarrays of barley1. barley1probe furnishes information on probe sequence, its x et y coordinate on the array, the Affymetrix probe set name, its probe interrogation position and the target strandedness.
Serves as a specific oligo repository of probe, siRNA and primer design for human genome. SpecificDB is based on an integration of ANN and BLAST (IAB) algorithm to predict and identify specific N-mer oligos through polymerase chain reaction experiments. The web platform also offers several tools for microarray analysis and genome-wide iterative enrichment analysis.
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