MicrobeCensus specifications


Unique identifier OMICS_07840
Name MicrobeCensus
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Numpy, BioPython
Maintained Yes


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  • person_outline Katherine S. Pollard <>

MicrobeCensus article

MicrobeCensus citation

PMCID: 5363007

[…] (afl) or the average length of the matched genes within a gene familyaverage genome size (ags) or the estimated average genome length based on single-copy universal marker genes (estimated using microbecensus: [36] http://github.com/snayfach/microbecensus). , average family length (afl) or the average length of the matched genes within a gene family, average genome size (ags) […]

MicrobeCensus institution(s)
Integrative Program in Quantitative Biology, University of California, San Francisco, CA, USA

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