Microbiome Helper specifications

Information


Unique identifier OMICS_17830
Name Microbiome Helper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, Python, R
Computer skills Advanced
Stability Stable
Requirements FASTQC, PEAR, GNU Parallel, Bowtie2, Human pre-indexed database, DIAMOND, MetaPhlAn2, HUMAnN, FASTX toolkit, BBMap, VSEARCH, QIIME, SortMeRNA, SUMACLUST, PICRUSt, STAMP, 16S chimera, 8S chimera, ITS2 chimera, Eukaryotic OUT, ITS2 OUT
Maintained Yes

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Publication for Microbiome Helper

Microbiome Helper institution(s)
CGEB-Integrated Microbiome Resource (IMR) and Department of Pharmacology, Dalhousie University, Halifax, NS, Canada
Microbiome Helper funding source(s)
Funded through the Dalhousie University Strategic Research Initiatives Fund.

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