MicrobiomeAnalyst protocols

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MicrobiomeAnalyst specifications

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Unique identifier OMICS_17899
Name MicrobiomeAnalyst
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jianguo Xia <>

Publication for MicrobiomeAnalyst

MicrobiomeAnalyst in pipeline

2017
PMCID: 5701178
PMID: 29176730
DOI: 10.1038/s41598-017-16353-x

[…] was calculated using ‘species’ level of ncbi taxonomy to generate a table with megan 5. permanova and anova statistical analysis were performed with phyloseq., as implemented in the tool microbiomeanalyst. venn diagrams were generated with biovenn using the ‘species’ level table as an input to generate area-proportional representation., the alignment of assigned reads against full […]


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MicrobiomeAnalyst in publications

 (2)
PMCID: 5921754
PMID: 29703207
DOI: 10.1186/s12933-018-0708-x

[…] consisting of laplace smoothing followed by sub-sampling with replacement. data were rarefied to 12,629 sequence reads with 100 iterations. ancova analysis was conducted in myphylodb [], and microbiomeanalyst [] was used to calculate alpha diversity scores, bray–curtis distances, and lefse. the raw sequencing data and associated metadata will be made available upon request., data […]

PMCID: 5871783
PMID: 29593306
DOI: 10.1038/s41598-018-23373-8

[…] was calculated based on weighted unifrac distances and principal coordinate analysis (pcoa) was applied on resulting distance matrices to generate two-dimensional plots using the online package microbiomeanalyst., the univariate procedure of sas (sas 9.3; sas institute inc., cary, nc, usa) was used to test the normality of residuals for zootechnical data, alpha-diversity indices, […]


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MicrobiomeAnalyst institution(s)
Department of Animal Science, McGill University, Quebec, Canada; Institute of Parasitology, McGill University, Quebec, Canada; School of Dietetics and Human Nutrition, McGill University, Quebec, Canada; Department of Microbiology and Immunology, McGill University, Quebec, Canada; Microbiome and Disease Tolerance Center (MDTC), McGill University, Quebec, Canada
MicrobiomeAnalyst funding source(s)
This work was supported by the McGill Startup Fund and the Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery Grant.

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