MicrobiomeAnalyst protocols

MicrobiomeAnalyst specifications

Information


Unique identifier OMICS_17899
Name MicrobiomeAnalyst
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jianguo Xia <>

Publication for MicrobiomeAnalyst

MicrobiomeAnalyst IN pipeline

2017
PMCID: 5701178
PMID: 29176730
DOI: 10.1038/s41598-017-16353-x

[…] was calculated using ‘species’ level of ncbi taxonomy to generate a table with megan 566. permanova and anova statistical analysis were performed with phyloseq.69, as implemented in the tool microbiomeanalyst70. venn diagrams were generated with biovenn71 using the ‘species’ level table as an input to generate area-proportional representation., the alignment of assigned reads […]

MicrobiomeAnalyst institution(s)
Department of Animal Science, McGill University, Quebec, Canada; Institute of Parasitology, McGill University, Quebec, Canada; School of Dietetics and Human Nutrition, McGill University, Quebec, Canada; Department of Microbiology and Immunology, McGill University, Quebec, Canada; Microbiome and Disease Tolerance Center (MDTC), McGill University, Quebec, Canada
MicrobiomeAnalyst funding source(s)
This work was supported by the McGill Startup Fund and the Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery Grant.

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