microbiomeGWAS statistics

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microbiomeGWAS specifications


Unique identifier OMICS_17829
Name microbiomeGWAS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output format txt
Operating system Unix/Linux, Mac OS
Programming languages C, R, Other
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




No version available


  • person_outline Jianxin Shi <>

Publication for microbiomeGWAS

microbiomeGWAS citation


Application of the distance based F test in an mGWAS investigating β diversity of intestinal microbiota identifies variants in SLC9A8 (NHE8) and 3 other loci

PMCID: 5939986
PMID: 28816579
DOI: 10.1080/19490976.2017.1356979

[…] investigating only roughly one hundred individuals, or based on candidate genes to reduce multiple testing burden., an analysis approach, focusing on host-genetic influences on β diversity using the microbiomegwas framework, which uses linear models to correlate genotype distance data with pairwise β diversity data, correcting for skewness and kurtosis of the results, identified 2 loci […]

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microbiomeGWAS institution(s)
Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institute of Health, Bethesda, MD, USA
microbiomeGWAS funding source(s)
Supported by the NIH Intramural Research program.

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