microCLIP specifications


Unique identifier OMICS_31076
Name microCLIP
Software type Framework/Library, Package/Module
Interface Command line interface
Restrictions to use None
Input data Some miRNA sequences, an alignment file and a gene annotation file.
Input format FASTA+SAM/BAM+BED
Output data Some (non-)canonical miRNA interactions.
Output format BED
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




No version available


  • person_outline Artemis G. Hatzigeorgiou
  • person_outline Maria Paraskevopoulou

Additional information


Publication for microCLIP

microCLIP institution(s)
DIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, Volos, Greece; Molecular Oncology Research Institute, Tufts Medical Center, Boston, MA, USA; Department of Neurology, Brigham & Women’s Hospital, Harvard Medical School, Boston, MA, USA; Hellenic Pasteur Institute, Athens, Greece
microCLIP funding source(s)
Supported by the project “ELIXIR-GR: The Greek Research Infrastructure for Data Management and Analysis in Life Sciences” (MIS 5002780), a Fondation Santé grant, a PhD fellowship from the General Secretariat of Research and Technology (GSRT) and the Hellenic Foundation for Research and Innovation (ELIDEK) and a PhD fellowship from IKY Foundation.

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