microHarvester specifications

Information


Unique identifier OMICS_22738
Name microHarvester
Interface Web user interface
Restrictions to use None
Input data A miRNA precursor sequence plus mature miRNA sequence.
Output data An overview document generated for each miRNA query.
Output format PDF
Computer skills Basic
Maintained Yes

Maintainer


  • person_outline Tobias Dezulian

Additional information


microHARVESTER is offered as a web-service and additionally as source code upon request

Publication for microHarvester

microHarvester citations

 (2)
library_books

miR Explore: Predicting MicroRNA Precursors by Class Grouping and Secondary Structure Positional Alignment

2013
Bioinform Biol Insights
PMCID: 3623602
PMID: 23645986
DOI: 10.4137/BBI.S10758

[…] hods. The comparative method relies on the conservation of miRNAs across the genome of organisms. Some examples of computational method using the comparative method are miRScan,, miRAlign, ERPIN, and microHarvester. For miRNAs that do not have conserve sequences, noncomparative methods are needed. Some examples of the noncomparative method are triplet-SVM, miPred, PromiR, and miR-abela. The ration […]

library_books

Computational Prediction of MicroRNAs Encoded in Viral and Other Genomes

2006
PMCID: 1559940
PMID: 17057374
DOI: 10.1155/JBB/2006/95270

[…] ify potential miRNAs. Their pattern matching program, Patbank, was used for finding homologues and their MIRFOLD program was used to check for possible miRNA secondary structures.In this context, the microHarvester should be mentioned as it is a useful web service designed to detect miRNA homologues in any set of sequences, given an miRNA precursor []. The microHarvester is filter based and uses t […]

microHarvester institution(s)
Center for Bioinformatics Tubingen, Tubingen University, Germany; Max Planck Institute for Developmental Biology, Tubingen, Germany

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