microPred statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left miRNA precursor prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

microPred specifications

Information


Unique identifier OMICS_08792
Name microPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


Add your version

Maintainer


  • person_outline Rukshan Batuwita <>

Information


Unique identifier OMICS_08792
Name microPred
Interface Web user interface
Restrictions to use None
Programming languages Java, Perl
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Rukshan Batuwita <>

Publication for microPred

microPred in publications

 (6)
PMCID: 5192489
PMID: 27918472
DOI: 10.3390/genes7120113

[…] a sensitivity of 97.40% and a specificity of 95.85% were obtained. this approach was also compared with another four state-of-the-art classification methods: mipred [], mipred [], mirabela [], micropred [], and triplet-svm [] classifier. a new classifier was developed in [] to predict the regulation of mirna. in that study, they showed that the state-of-the-art methods are adequate […]

PMCID: 4867574
PMID: 27181057
DOI: 10.1038/srep25941

[…] pre-mirnas which extract from protein coding regions and have similar stem-loop structures with genuine pre-mirnas but have not been reported as pre-mirnas, such as triplet, mipred, heteromirpred, micropred, plantmirnapred ,mirnadetect and the algorithm developed huang et al.. recently, a series of up-to-data methods are proposed for pre-mirna identification with a detailed research on feature […]

PMCID: 4657081
PMID: 26640803
DOI: 10.1155/2015/960108

[…] used to classify the real and pseudo pre-mirnas. therefore, the total of 139 features were merged to form our feature set. during the process of our feature extraction, the codes of mipred, micropred, triplet-svm, and mirnapre were executed to obtain the respective features. all the extracted features were merged to represent each of real and pseudo pre-mirnas., a pre-mirna […]

PMCID: 3544654
PMID: 23259970
DOI: 10.1186/1471-2164-13-718

[…] mfe (nmfe) was calculated as mfe divided by length. randfold [] was used to calculate the probability that a pre-mirna structure has an mfe that is lower than a randomly shuffled sequence. micropred program [] was used to calculate 48 features of human pre-mirnas. for each human known mirna age groups, average was plotted in the figure with error bars of standard deviation. mirident [] […]

PMCID: 3118167
PMID: 21575268
DOI: 10.1186/1471-2105-12-165

[…] triplet features. mipred extended the triplet-svm, using the random forest algorithm based on hybrid features to improve the classification results [,]. to the contrary, mipred and micropred regarded some other ncrnas (such as trnas and rrnas) as a negative training/testing dataset for the reason that pseudo hairpin structures can be found in the complete secondary structures […]


To access a full list of publications, you will need to upgrade to our premium service.

microPred institution(s)
Oxford University Computing Laboratory, University of Oxford, Wolfson Building, Parks Road, Oxford, UK

microPred reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review microPred