MicroRazerS protocols

MicroRazerS specifications

Information


Unique identifier OMICS_00371
Name MicroRazerS
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

Versioning


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Maintainers


This tool is not maintained anymore.

Publication for MicroRazerS

MicroRazerS IN pipeline

2015
PMCID: 4300914
PMID: 25653665
DOI: 10.3389/fpls.2015.00005

[…] from the analysis. the cutoff value for significance was q < 0.2 (the benjamini-hochberg method) (benjamini and hochberg, 1995)., the precise mapping of all assorted small rnas was done using microrazers v 1.0 software with default settings (i.e., the first 16-nt-long ones were matched, no mismatch allowed) (emde et al., 2010). only tags that were considered to be significantly changed (q […]

MicroRazerS institution(s)
Department of Computer Science, Free University of Berlin, Berlin, Germany; International Max Planck Research School for Computational Biology and Scientific Computing, Berlin, Germany; Group Cardiovascular Genetics, Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany
MicroRazerS funding source(s)
Supported by European Community’s Sixth Framework Program contract (‘HeartRepair’) LSHM-CT-2005-018630.

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