Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

MicroRNA microarray data analysis bioinformatics software tools

MicroRNA microarray technology is a powerful high-throughput tool capable of monitoring the expression of thousands of microRNAs at once within tens of samples processed in parallel in a single experiment (Liu et al., 2004). While many of the same…
InCroMAP
Desktop

InCroMAP Integrated analysis of Cross-platform MicroArray and Pathway data

A tool for the analysis and visualization of high-level microarray data from…

A tool for the analysis and visualization of high-level microarray data from individual or multiple different platforms. Currently, InCroMAP supports mRNA, microRNA, DNA methylation and protein…

MmPalateMiRNA
Desktop

MmPalateMiRNA

A compendium for the analysis of murine palate miRNA two-color expression data.…

A compendium for the analysis of murine palate miRNA two-color expression data. MmPalateMiRNA has been made freely available on Bioconductor. It also includes several functions to produce diagnostic…

AgiMicroRna
Desktop

AgiMicroRna

A package for the pre-processing and differential expression analysis of…

A package for the pre-processing and differential expression analysis of Agilent microRNA array data. For the pre-processing of the microRNA signal, AgiMicroRNA incorporates the robust multiarray…

MagiCMicroRna
Web

MagiCMicroRna

A user-friendly web interface for the AgiMicroRna R-package. MagiCMicroRna…

A user-friendly web interface for the AgiMicroRna R-package. MagiCMicroRna enables researchers to normalize and filter Agilent microarrays by the click of one button. Furthermore, MagiCMicroRna…

MiChip
Desktop

MiChip

Takes the MiChip miRNA microarray .grp scanner output files and parses these…

Takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into…

RmiR
Desktop

RmiR

Provides useful functions to merge microRNA and respective targets using…

Provides useful functions to merge microRNA and respective targets using differents databases.

targetscan.Hs.e…
Desktop

targetscan.Hs.eg.db

Predicts biological targets of miRNAs by searching for the presence of…

Predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Sites with mismatches in the seed region that are…

ExiMiR
Desktop

ExiMiR

A package that contains functions for reading raw data in ImaGene TXT format…

A package that contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in…

LVSmiRNA
Desktop

LVSmiRNA

Normalization of Agilent miRNA arrays.

Normalization of Agilent miRNA arrays.

MiRaGE
Desktop

MiRaGE

Contains functions for inference of target gene regulation by miRNA, based on…

Contains functions for inference of target gene regulation by miRNA, based on only target gene expression profile.

miRCURY LNA…
Desktop

miRCURY LNA microRNA Array Analysis Software

Allows analysis of Exiqon miRCURY LNA™ microRNA Array data. miRCURY LNA…

Allows analysis of Exiqon miRCURY LNA™ microRNA Array data. miRCURY LNA microRNA Array Analysis Software contains ImaGene® 9, Nexus Expression™ 3 from BioDiscovery and settings files for…

miRNApath
Desktop

miRNApath

Provides pathway enrichment techniques for miRNA expression data. Specifically,…

Provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to…

SylArray
Web

SylArray

Analyses large-scale expression datasets. It utilizes curated sets of 3’ UTRs…

Analyses large-scale expression datasets. It utilizes curated sets of 3’ UTRs to attach sequences to these genes and then applies the Sylamer algorithm for detection of miRNA or siRNA signatures in…

Qlucore Omics…
Desktop

Qlucore Omics Explorer

Provides bioinformatics products to support the user with visual analysis of…

Provides bioinformatics products to support the user with visual analysis of measured data taking into account publicly available information such as gene ontologies, pathways and other system…

GeneSpring GX
Desktop

GeneSpring GX

Provides powerful, accessible statistical tools for fast visualization and…

Provides powerful, accessible statistical tools for fast visualization and analysis of microarrays - expression arrays, miRNA, exon arrays and genomics copy number data.

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.