miTRATA specifications

Unique identifier:
OMICS_10241
Software type:
Package/Module
Restrictions to use:
None
Output data:
The results page displays the output, including a summary of truncation and tailing results in a tabular form, the graphed data, and links to download the results.
Programming languages:
Python
Stability:
Stable
Name:
microRNA Truncation and Tailing Analysis
Interface:
Command line interface
Input data:
The input data or parameters such as the small RNA sequence files, the genome of interest (the Bowtie index to be used), the list of miRNAs to analyze, and their contact information.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

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miTRATA specifications

Unique identifier:
OMICS_10241
Interface:
Web user interface
Input data:
The input data or parameters such as the small RNA sequence files, the genome of interest (the Bowtie index to be used), the list of miRNAs to analyze, and their contact information.
Programming languages:
PHP, Python
Stability:
Stable
Name:
microRNA Truncation and Tailing Analysis
Restrictions to use:
None
Output data:
The results page displays the output, including a summary of truncation and tailing results in a tabular form, the graphed data, and links to download the results.
Computer skills:
Basic
Maintained:
Yes

miTRATA support

Maintainer

  • Meyers B. C. <>
  • Meyers B. C. <>

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Publications

Institution(s)

Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA; Delaware Biotechnology Institute, University of Delaware Newark, DE, USA; Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA

Funding source(s)

This work was supported by the National Institute of Food and Agriculture, U.S. Department of Agriculture, under Agreement No. 2012-67013-19396.

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