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MIcroSAtellite identification tool MISA-web

Can retrieve sequences from the NCBI database by specifying the corresponding accession numbers in the input field. MISA-web is an extension to the command line tool MISA embedded into an easy-to-use web-based graphical user interface. MISA-web supports two different output formats: the proprietary MISA output format and generic GFF3. The GFF3 output format facilitates the integration of MISA-web search results in downstream analysis pipelines.

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MISA-web classification

MISA-web specifications

Web user interface
Input data:
Accession number(s), sequence
Computer skills:
Restrictions to use:
Input format:

MISA-web support


  • Uwe Scholz <>


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Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany; KWS Saat SE, Einbeck, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany

Funding source(s)

This work was supported by the German Federal Ministry of Education and Research (BMBF) grant FKZ 0315954A.

Link to literature

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