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Microsatellite instability identification software tools | High-throughput sequencing data analysis

Microsatellite instability (MSI) is a form of hypermutation caused by defective DNA mismatch repair (MMR). MSI is characterized by widespread changes in the length of genomic mononucleotide repeats (e.g., AAAAA….) or microsatellites (e.g.,…
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MOSAIC
Desktop

MOSAIC MicrOSAtellite Instability Classifier

Predicts microsatellite instability (MSI) status. MOSAIC is a weighted-tree…

Predicts microsatellite instability (MSI) status. MOSAIC is a weighted-tree microsatellite instability classifier that ascertains MSI status from tumor–normal tissue pairs examined with…

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MANTIS
Desktop

MANTIS Microsatellite Analysis for Normal Tumor InStability

Permits users to detect microsatellite instability in paired tumor-normal…

Permits users to detect microsatellite instability in paired tumor-normal patient samples. MANTIS evaluates the general instability present in a tumor sample, using the data from the corresponding…

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mSINGS
Desktop

mSINGS MSI by NGS

Allows users to detect the microsatellite instability (MSI) phenotype using…

Allows users to detect the microsatellite instability (MSI) phenotype using next generation sequencing (NGS). mSINGS permits evaluation of mononucleotide microsatellite loci that were incidentally…

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MSIsensor
Desktop

MSIsensor

A C++ program for automatically detecting somatic and germline variants at…

A C++ program for automatically detecting somatic and germline variants at microsatellite regions.

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MSIseq
Desktop

MSIseq

Allows users to detect microsatellite instability (MSI) in somatic mutation…

Allows users to detect microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSIseq provides two main functions which implement next-generation sequencing (NGS)…

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MIRMMR
Desktop

MIRMMR Microsatellite Instability Regression using Methylation and Mutations in R

Classifies microsatellite instability (MSI) status. MIRMMR trains logistic…

Classifies microsatellite instability (MSI) status. MIRMMR trains logistic regression models using DNA methylation and mutation information from mismatch repair (MMR) pathway genes. It reports a…

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