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MicroScope | ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps

A ChIP-seq and RNA-seq software suite for visualizing and analyzing genomic data, including features to support differential expression analysis, heatmap production, principal component, gene ontology and dynamic network analysis. MicroScope allows the user to magnify any portion of a heatmap by a simple click-and-drag feature to zoom in, within the R programming environment, without any prerequisite programming skills required of the user. MicroScope is designed with large gene expression heatmaps in mind, where individual gene labels overlap and render the text unreadable.

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MicroScope forum

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MicroScope classification

MicroScope specifications

Unique identifier:
OMICS_12982
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Programming languages:
Javascript, R
Stability:
Stable

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MicroScope classification

MicroScope specifications

Unique identifier:
OMICS_12982
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
RStudio
Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Javascript, R
Stability:
Stable
Maintained:
Yes

MicroScope distribution

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MicroScope support

Maintainer

  • Bohdan B. Khomtchouk <>
  • Bohdan B. Khomtchouk <>

Credits

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Publications

Institution(s)

Center for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, Miami, FL, USA

Funding source(s)

Funding provided from the United States Department of Defense (DoD) through the National Defense Science and Engineering Graduate Fellowship (NDSEG) Program; the Army Research Office (ARO), the National Defense Science and Engineering Graduate (NDSEG) Fellowship, 32 CFR 168a.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.