A software platform that enables access to and use of a wide range of biological data. OMERO uses a server-based middleware application to provide a unified interface for images, matrices and tables. OMERO's design and flexibility have enabled its use for light-microscopy, high-content-screening, electron-microscopy and even non-image-genotype data.
Permits surface rendering, multivariate statistical analysis (MSA), automatic classification, projection matching, angular reconstitution, automatic particle selection. IMAGIC can be employed for real data processing run for educational or testing purposes. This tool can exploit the properties of cheap graphic processors. It is useful for 4D analysis at atomic resolution or for refining towards multiple 3D structures.
A library software to create extensible framework for the reading, writing, and translation of images. SCIFIO was designed to provide the architecture that will equally facilitate: i) the conversion of additional formats into supported open-exchange formats such as OME-TIFF and ii) the integration of additional scientific open-exchange formats. The extensible design of SCIFIO facilitates community contribution, the establishment of domain-specific metadata standards, and integration into a unified system capable of adapting to the demands of scientific imaging analysis.
Converts TRACE files into PostScript format. Trace2PS provides an easy to handle software toolkit implemented in Perl. Due to its platform independency, it can be integrated into a variety of software projects or data analysis pipelines. The user can also supplement the field content by missing trace file items or customize the content by overwriting the default. The PostScript’s output can afterwards be converted into various file formats.
Converts the metadata in proprietary scientific image file formats into the open Open Microscopy Environment (OME) Data Model. OME Files provides a seamless, performant way for these calculations to use OMETIFF. It provides interoperability with the wide range of existing software supporting OME-XML and OME-TIFF formats. The tool is several-fold faster reading and writing metadata from a multi-dimensional fluorescence image. It is a performant, useful resource for reading and writing OME-TIFF in several different use cases.
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