Represents body parts, organs and tissues in a variety of animal species, with a focus on vertebrates. Uberon is an integrated cross-species ontology covering anatomical structures in animals. It has been constructed to integrate seamlessly with other ontologies, such as the OBO Cell Ontology, the Gene Ontology, Trait and Phenotype ontologies, as well as other anatomical ontologies. It includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.
Provides about 360 phenotype terms. CMPO can be used to annotate mitotic phenotypes observed in live human cells, as well as cellular phenotypes from tissue microarrays of diseased tissues from both human patients and mouse models. It describes a cell population phenotype as a collection of qualities that inhere in a population of cells. The database follows many standard conventions from the open biological and biomedical ontologies (OBO) foundry for ontology term metadata.
Allows the curation of C. elegans phenotypes. WPO includes phenotypic data from other nematode species. It contains streamlined version of the ontology that provides a subset of the terms in the whole ontology. The terminology aims to help integration of data from many different sources into a common body of knowledge, and to facilitate data mining and comparisons across species.
Provides terms to curate phenotypes affecting behaviour and biological processes such as cell division of Drosophila melanogaster. DPO is limited to about 200 high-level and commonly described phenotypic classes. The terminology increases the possibilities for sophisticated and accurate queries to be made against the very large, rich dataset of DPO annotations curated and maintained by FlyBase.
Displays an anatomy ontology dealing with Porifera. PORO is a terminology that principally leans on the Thesaurus of Sponge Morphology, with the aim of extending its usabilty for character matrices construction for both modern and fossil taxa. This controlled vocabulary intends to link data about structural, functional, genetic, and gene expression data in sponges to improve researches about their morphological features as well as for further applications in molecular approaches.
Intends to represent structures according their dimensional range. SAO is an ontology that aims to describe biological information dealing with cellular and subcellular structure, macromolecules as well as supracellular domains. This terminology is used by the Neuroscience Information Framework.
Provides a database of embryonic development, stem cell differentiation, regenerative medicine and gene expression. LifeMap Discovery is designed to provide the research community with viable, scalable, and easy to manage data describing cellular and anatomical development. The database is based on systematic gathering, analysis and de novo assimilation of peer reviewed scientific data and data resources describing mouse and human development.