MicroSNiPer protocols

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MicroSNiPer statistics

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MicroSNiPer specifications

Information


Unique identifier OMICS_00388
Name MicroSNiPer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for MicroSNiPer

MicroSNiPer in pipeline

2018
PMCID: 5760646
PMID: 29317647
DOI: 10.1038/s41598-017-17518-4

[…] stability or may alter the binding affinity of regulatory mirnas., we used several databases including, mirbase (http://microrna.sanger.ac.uk), mirnasnp (http://www.bioguo.org/mirnasnp/index.php), microsniper http://vm24141.virt.gwdg.de/services/microsniper/index.php), targetscan (http:// targetscan.org/vert_71/) in order to predict mirnas that target hiwi2 3′ utr region. the predicted mirnas […]


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MicroSNiPer in publications

 (23)
PMCID: 5800657
PMID: 29408916
DOI: 10.1371/journal.pone.0192385

[…] cis-eqtl snps that affect the expression of genes of our interest and microrna binding site prediction tools (http://www.microrna.org/microrna/home.do, http://epicenter.iefreiburg.mpg.de/services/microsniper/) to investigate the 3’-utr and to predict if a snp within the target site will disrupt/eliminate or enhance/create a microrna binding site. perfectos-ape […]

PMCID: 5760646
PMID: 29317647
DOI: 10.1038/s41598-017-17518-4

[…] stability or may alter the binding affinity of regulatory mirnas., we used several databases including, mirbase (http://microrna.sanger.ac.uk), mirnasnp (http://www.bioguo.org/mirnasnp/index.php), microsniper http://vm24141.virt.gwdg.de/services/microsniper/index.php), targetscan (http:// targetscan.org/vert_71/) in order to predict mirnas that target hiwi2 3′ utr region. the predicted mirnas […]

PMCID: 5396474
PMID: 28480217
DOI: 10.1155/2017/1674827

[…] complementary to existing methods/tools. although there are several existing databases predicting the gain or loss of targeting function of mirna mediated by snps, such as polymirts, mirnasnp, microsniper, and mirsnp, none of them evaluated the influences of tarsnps on drug response alterations. we developed a user-friendly online database of this approach named mir2drug., micrornas […]

PMCID: 5487927
PMID: 28121058
DOI: 10.1111/jcmm.13058

[…] appropriate bioinformatics websites were used to predict the putative binding site for rs3821204: http://snpinfo.niehs.nih.gov/snpinfo/snp func.htm and http://epicenter.ie-freiburg.mpg.de/services/microsniper/., fasting venous blood was collected from the peripheral vein. dna was extracted using a puregene kit (gentra systems, inc., minneapolis, mn, usa). twelve snps were genotyped using […]

PMCID: 5378805
PMID: 28044063
DOI: 10.1038/mp.2016.241

[…] ccsi http://songyanglab.sysu.edu.cn/ccsi/search.php., miranda http://www.microrna.org/microrna/home.do., target scan http://www.targetscan.org/vert_71/., microsniper http://epicenter.ie-freiburg.mpg.de/services/microsniper/., nonexhaustive list of examples., abbreviations: 3c, chromosome conformation capture; 4c, circular 3c; emsa, electrophoretic […]


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MicroSNiPer institution(s)
Genes, Cognition and Psychosis Program, Clinical Brain Disorders Branch, National Institute of Mental Health, NIH, Bethesda, MD, USA; Bioinformatics and Computational Biosciences Branch, OCICB/OSMO/OD, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD, USA
MicroSNiPer funding source(s)
The work was supported by the Intramural Research Program of the National Institute of Mental Health, NIH.

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