MicroSNiPer statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MicroSNiPer
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This map represents all the scientific publications referring to MicroSNiPer per scientific context
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Protocols

MicroSNiPer specifications

Information


Unique identifier OMICS_00388
Name MicroSNiPer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for MicroSNiPer

MicroSNiPer citations

 (24)
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Investigation of single and synergic effects of NLRC5 and PD L1 variants on the risk of colorectal cancer

2018
PLoS One
PMCID: 5800657
PMID: 29408916
DOI: 10.1371/journal.pone.0192385
call_split See protocol

[…] all cis-eQTL SNPs that affect the expression of genes of our interest and microRNA binding site prediction tools (http://www.microrna.org/microrna/home.do, http://epicenter.iefreiburg.mpg.de/services/microsniper/) to investigate the 3’-UTR and to predict if a SNP within the target site will disrupt/eliminate or enhance/create a microRNA binding site. PERFECTOS-APE (http://opera.autosome.ru/perfect […]

library_books

Investigation of piwi interacting RNA pathway genes role in idiopathic non obstructive azoospermia

2018
Sci Rep
PMCID: 5760646
PMID: 29317647
DOI: 10.1038/s41598-017-17518-4

[…] mRNA stability or may alter the binding affinity of regulatory miRNAs.We used several databases including, mirBase (http://microrna.sanger.ac.uk), miRNASNP (http://www.bioguo.org/miRNASNP/index.php), MicroSNiPer http://vm24141.virt.gwdg.de/services/microsniper/index.php), TargetScan (http:// targetscan.org/vert_71/) in order to predict miRNAs that target HIWI2 3′ UTR region. The predicted miRNAs a […]

library_books

An Integrating Approach for Genome Wide Screening of MicroRNA Polymorphisms Mediated Drug Response Alterations

2017
Int J Genomics
PMCID: 5396474
PMID: 28480217
DOI: 10.1155/2017/1674827

[…] nt in this study. However, in many cases, such information would be very valuable. For example, we can collect this information to quantitatively compare the performance of existing tools (PolymiRTS, MicroSNiPer, MirSNP, and miRNASNP) using cross-validation method if we have sufficient experimentally verified cases and further optimize our method. With the accumulation of such validation and exper […]

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A functional variant in ST2 gene is associated with risk of hypertension via interfering MiR‐202‐3p

2017
J Cell Mol Med
PMCID: 5487927
PMID: 28121058
DOI: 10.1111/jcmm.13058
call_split See protocol

[…] Appropriate bioinformatics websites were used to predict the putative binding site for rs3821204: http://snpinfo.niehs.nih.gov/snpinfo/snp func.htm and http://epicenter.ie-freiburg.mpg.de/services/microsniper/. […]

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A functional polymorphism in the NKG2D gene modulates NK cell cytotoxicity and is associated with susceptibility to Human Papilloma Virus related cancers

2016
Sci Rep
PMCID: 5172372
PMID: 27995954
DOI: 10.1038/srep39231
call_split See protocol

[…] Using the online algorithms TargetScan, miTarget and MicroSniper, we identified a conserved target site mapping within the rs1049174 SNP in the NKG2D 3′ UTR. HEK cells overexpressing microRNA-1245 were generated as described in a previous report by lent […]

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Relationship of TRIM5 and TRIM22 polymorphisms with liver disease and HCV clearance after antiviral therapy in HIV/HCV coinfected patients

2016
J Transl Med
PMCID: 5010694
PMID: 27590274
DOI: 10.1186/s12967-016-1005-7
call_split See protocol

[…] atch/); (b) rSNABase (http://rsnp.psych.ac.cn/); (c) SIFT (http://sift.bii.a-star.edu.sg/index.html); (d) analysis for possible miRNA binding site according to each polymorphism was explored by using MicroSNiPer web tool (http://epicenter.ie-freiburg.mpg.de/services/microsniper/). […]


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MicroSNiPer institution(s)
Genes, Cognition and Psychosis Program, Clinical Brain Disorders Branch, National Institute of Mental Health, NIH, Bethesda, MD, USA; Bioinformatics and Computational Biosciences Branch, OCICB/OSMO/OD, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD, USA
MicroSNiPer funding source(s)
The work was supported by the Intramural Research Program of the National Institute of Mental Health, NIH.

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