MicroSyn statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool MicroSyn
info

Tool usage distribution map

This map represents all the scientific publications referring to MicroSyn per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Synteny block detection chevron_right
Want to access the full stats & trends on this tool?

MicroSyn specifications

Information


Unique identifier OMICS_11711
Name MicroSyn
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages C#
Computer skills Medium
Stability No
Requirements
Net framework
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for MicroSyn

MicroSyn citations

 (10)
library_books

Characterization and expression of the ABC family (G group) in ‘Dangshansuli’ pear (Pyrus bretschneideri Rehd.) and its russet mutant

2018
Genet Mol Biol
PMCID: 5901498
PMID: 29658971
DOI: 10.1590/1678-4685-GMB-2017-0109

[…] The chromosome number is indicated on the chromosome. The synteny relationship between each pair of ABCG genes was detected using the MicroSyn software and positioned on the 17 pear chromosomes. The PbABCG gene names were assigned according to their position on pear chromosomes 1-17. The chromosome map showing the physical location […]

library_books

Retention and Molecular Evolution of Lipoxygenase Genes in Modern Rosid Plants

2016
Front Genet
PMCID: 5043136
PMID: 27746812
DOI: 10.3389/fgene.2016.00176

[…] Microsynteny analysis within four species was detected by MicroSyn software (Cai et al., ). At the beginning of the generated MSY file step, three property files are needed: the gene list file, the CDS file and the gene identifier file. The microsynteny grap […]

library_books

Evolutionary and functional analysis of mulberry type III polyketide synthases

2016
BMC Genomics
PMCID: 4973071
PMID: 27487946
DOI: 10.1186/s12864-016-2843-7

[…] All scaffolds that contained putative mulberry type III PKS genes were analyzed. The microsyntenic regions surrounding genes were detected using MicroSyn software []. The mean Ks value was calculated for all pairs of protein-coding genes among all genomic fragments using the method described by Nei and Gojobori []. The timing of gene duplicati […]

library_books

Molecular evolution and expression divergence of the Populus euphratica Hsf genes provide insight into the stress acclimation of desert poplar

2016
Sci Rep
PMCID: 4948027
PMID: 27425424
DOI: 10.1038/srep30050

[…] //chibba.agtec.uga.edu/duplication/). For duplication of Hsf genes in P. euphratica and S. suchowensis, the duplicated events were identified based on the duplicated block from synteny analysis using MicroSyn. A duplicated block was defined as a region where three or more conserved homologs were located within 15 genes up- and down-stream between scaffolds. […]

library_books

Characterization and Comparison of the CPK Gene Family in the Apple (Malus × domestica) and Other Rosaceae Species and Its Response to Alternaria alternata Infection

2016
PLoS One
PMCID: 4871508
PMID: 27186637
DOI: 10.1371/journal.pone.0155590

[…] r locations on the chromosomes in the GFF file. Genes with a maximum of 5 genes distance were considered to be tandem duplicates. The syntenies between each pair of members were detected by using the MicroSyn software. The parameters were set as follows: window size of 100 genes, tandem gap value of 2, expected threshold value cut off of 1e-10, and 8 homologous pairs to define a syntenic segment. […]

library_books

VGSC: A Web Based Vector Graph Toolkit of Genome Synteny and Collinearity

2016
Biomed Res Int
PMCID: 4783527
PMID: 27006949
DOI: 10.1155/2016/7823429

[…] s it can reveal ancient WGD events [] and complex chromosomal duplication/rearrangement relationships []. One of the early software packages providing analysis of collinearity within gene families is MicroSyn []. MCScan [], Multiple Collinearity Scan, is another very popular algorithm in synteny and collinearity detection. It scans multiple genomes or subgenomes, identifies putative homologous chr […]


Want to access the full list of citations?
MicroSyn institution(s)
College of Horticulture, Nanjing Agricultural University, Nanjing, China; Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA; BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, TN, USA

MicroSyn reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MicroSyn