MID specifications


Unique identifier OMICS_10997
Name MID
Alternative name Micro-Inversion Detector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data BAM file of unmapped reads
Output data The output files contain detailed alignments of each unmapped read with MIs and a list of unique MIs.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements GCC, C++
Maintained Yes


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  • person_outline Remo Rohs <>

Publication for Micro-Inversion Detector

MID institution(s)
State Key Laboratory for Turbulence and Complex Systems and Department of Biomedical Engineering, and Center for Quantitative Biology, Peking University, Beijing, China; Department of Bioengineering, University of Illinois, Urbana, IL, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, IL, USA; Division of Applied Mathematics, Brown University, Providence, RI, USA
MID funding source(s)
This work was supported in part by the National Key Technology Research and Design Program of China [2012BAI06B02], the National Nature Science Fund of China [91231119 and 61131003], the National Institutes of Health [HG007352 and CA182360], the National Science Foundation [1054309 and 1262575] and the Foundation of the China Scholarship Council (CSC).

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