MIDAS specifications

Information


Unique identifier OMICS_23760
Name MIDAS
Alternative name Metagenomic Intra-species Diversity Analysis System
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Perl, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Numpy, BioPython, Pysam ,Pandas, Bowtie2, samtools, hs-blastn
Maintained Yes

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Documentation


Maintainer


  • person_outline Katherine S. Pollard <>

Additional information


http://lighthouse.ucsf.edu/MIDAS/

Publication for Metagenomic Intra-species Diversity Analysis System

MIDAS institution(s)
Integrative Program in Quantitative Biology, University of California, San Francisco, San Francisco, CA, USA; Gladstone Institutes, San Francisco, CA, USA; Institute for Human Genetics, Institute for Computational Health Sciences, and Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA
MIDAS funding source(s)
Supported by funding from National Science Foundation (NSF) Grant No. DMS-1069303, Gordon and Betty Moore Foundation Grant No. 3300, the San Simeon Fund, and institutional funds from Gladstone Institutes.

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