MIGenAS integrated bioinformatics toolkit statistics

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Number of citations per year for the bioinformatics software tool MIGenAS integrated bioinformatics toolkit
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Tool usage distribution map

This map represents all the scientific publications referring to MIGenAS integrated bioinformatics toolkit per scientific context
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Popular tool citations

chevron_left Bioinformatics workflows Multiple nucleotide sequence alignment Phylogenetic inference Nucleotide sequence homology search chevron_right
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Protocols

MIGenAS integrated bioinformatics toolkit specifications

Information


Unique identifier OMICS_24753
Name MIGenAS integrated bioinformatics toolkit
Alternative name MIGenAS
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

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Publication for MIGenAS integrated bioinformatics toolkit

MIGenAS integrated bioinformatics toolkit citations

 (4)
library_books

A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581T

2011
Environ Microbiol
PMCID: 3187862
PMID: 20849449
DOI: 10.1111/j.1462-2920.2010.02336.x

[…] thout GBlocks polishing] and phylogenetic analysis [e.g. employing PhyML (), PHYLIP ()] yielded qualitatively very similar results. The complete analysis pipelines were conducted with the help of the MIGenAS toolkit (). […]

call_split

Transcriptomic changes arising during light induced sporulation in Physarum polycephalum

2010
BMC Genomics
PMCID: 2837032
PMID: 20163733
DOI: 10.1186/1471-2164-11-115
call_split See protocol

[…] Similarity searches against protein databases were performed using BLASTX implemented in the MIGenAS tool [] (e-value 1 × 10-3). We utilized nine protein databases in this comparison: Swiss-Prot and TrEMBL (versions 56.3 and 39.3) [], dictyBase [] and RefSeq database subsets: mammalian, other […]

library_books

Bioinformatics process management: information flow via a computational journal

2007
Source Code Biol Med
PMCID: 2228283
PMID: 18053179
DOI: 10.1186/1751-0473-2-9

[…] odified to facilitate cluster computing.) The basic functionality of PISE is designed to execute programs sequentially. However, there is a plug-in called G-Pipe, which allows pipelines to be defined.MIGenAS [], the Max-Planck Integrated Gene Analysis System, is similar to PISE in that it offers a web page providing the ability to graphically enter program parameters and execute linear pipelines. […]

library_books

The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity

2006
BMC Genomics
PMCID: 1544339
PMID: 16820047
DOI: 10.1186/1471-2164-7-169

[…] and other RNAs were predicted using tRNAscan [] and BLAST [] against other halophiles, respectively. Phylogenetic analysis of proteins was performed using the Microbial Genome Analysis System package MiGenAS [,] and the MEGA3 phylogenetic tool software package [,]. […]


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MIGenAS integrated bioinformatics toolkit institution(s)
Rechenzentrum Garching der Max-Planck-Gesellschaft (RZG), am Max-Planck-Institut fur Plasmaphysik, Garching, Germany

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