MILLIPEDE specifications

Information


Unique identifier OMICS_18004
Name MILLIPEDE
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Kaixuan Luo

Publication for MILLIPEDE

MILLIPEDE citation

library_books

Survey of protein–DNA interactions in Aspergillus oryzae on a genomic scale

2015
Nucleic Acids Res
PMCID: 4482085
PMID: 25883143
DOI: 10.1093/nar/gkv334

[…] on, we counted the number of uniquely mapped DNase I tags with 5′ ends mapping to the position as specific experimental data. We combined genomic information with specific experimental data using the MILLIPEDE model () to estimate the probability that the candidate binding site was bound. We focused on DHSs (defined as 150 nucleotides in length) identified based on cleavage density peaks within hi […]

MILLIPEDE institution(s)
Program in Computational Biology and Bioinformatics, Duke University, Durham, NC, USA; Department of Computer Science, Duke University, Durham, NC, USA
MILLIPEDE funding source(s)
Supported by grants from NIH (P50 GM081883-01) and DARPA (HR0011-09-1-0040).

MILLIPEDE reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MILLIPEDE