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Mimicking Intelligent Read Assembly MIRA

Uses a Swiss army knife of sequence assembly developed and used in the past 16 years to get assembly jobs done efficiently - and especially accurately. MIRA is a whole genome shotgun (WGS) and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio. It supports ancillary data in TRACEINFO format (from NCBI), marks places of interest with tags so that these can be found quickly in finishing programs and has a single nucleotide polymorphism (SNP) analysis pipeline for sequencing data of viruses and prokaryotes.

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MIRA forum

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MIRA classification

MIRA specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Stability:
Stable
Interface:
Command line interface
Biological technology:
Illumina, Life Technologies, Pacific Biosciences, Roche
Computer skills:
Advanced
Maintained:
Yes

MIRA distribution

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MIRA support

Documentation

Maintainer

  • Bastien Chevreux <>

Credits

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Publications

Institution(s)

Department of Molecular Biophysics, German Cancer Research Centre Heidelberg, Heidelberg, Germany; MWG Biotech AG, Ebersberg, Germany; RZPD German Resource Center for Genome Research, Berlin, Germany; VitiGen AG, Siebeldingen, Germany; Abteilung Angewandte Molekularbiologie, Institut fur Physiologische Chemie, Universitat Mainz, Mainz, Germany; Institute for Medical Biometry and Informatics, University of Heidelberg, Heidelberg, Germany

Link to literature

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