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MimicrEE specifications

Information


Unique identifier OMICS_31380
Name MimicrEE
Alternative name Mimicing Experimental Evolution
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data Either haplotypes or a summary of the allele frequencies at generations specified by the user.
Operating system Unix/Linux
License Other
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Christian Schlotterer <>

Additional information


https://sourceforge.net/p/mimicree/wiki/browse_pages/

Publication for Mimicing Experimental Evolution

MimicrEE citations

 (4)
library_books

Genome wide analysis of long term evolutionary domestication in Drosophila melanogaster

2016
PMCID: 5177908
PMID: 28004838
DOI: 10.1038/srep39281

[…] populations have reached this limit and are at equilibrium. it is worth noting that this assumption of equilibrium might not be met in our system., to perform our first set of simulations we used mimicree ( https://sourceforge.net/projects/mimicree/), a forward simulation specifically designed to mimic experimental evolution. it simulates populations of diploid individuals where genomes […]

library_books

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution

2016
PMCID: 5068858
PMID: 27542959
DOI: 10.1534/genetics.116.191197

[…] increasing the variance of the estimate. the impact of dependence between snps is investigated based on 10 replicated whole-genome forward simulations with recombination, using the software tool mimicree (). as a starting population for the forward simulations, we sampled 2000 haploid genomes out of 8000 genomes simulated with fastsimcoal v.1.1.2 (; ). the parameters used to generate […]

library_books

Patterns of Linkage Disequilibrium and Long Range Hitchhiking in Evolving Experimental Drosophila melanogaster Populations

2014
PMCID: 4298179
PMID: 25415966
DOI: 10.1093/molbev/msu320

[…] lines (). we determine haplotype markers for different sets of known base-haplotypes and estimate haplotype frequencies for populations simulated under neutrality. simulations were performed with mimicree () using ne = 200 without recombination from a starting population with a similar representation of all 158 drgp base haplotypes for chromosomes x, 2l, and 3l. the frequency […]

library_books

Massive Habitat Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

2013
PMCID: 3907058
PMID: 24150039
DOI: 10.1093/molbev/mst205

[…] they were five generations old when making the mass-bred populations—then these numbers roughly accord with those expected within our experimental populations. the simulations were performed using mimicree (). this software enabled the modeling of recombination at rates that were derived from empirical estimates (). thirty simulations were performed and divided into 10 equal-sized subsets. […]


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MimicrEE institution(s)
Institut fur Populationsgenetik, Vetmeduni Vienna, Vienna, Austria
MimicrEE funding source(s)
Supported by the ERC grant “Archadapt” and Austrian Science Funds (FWF) grant P22725.

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