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Protocols

mimiRNA specifications

Information


Unique identifier OMICS_02805
Name mimiRNA
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for mimiRNA

mimiRNA citations

 (6)
library_books

MicroRNA binding site polymorphisms in hematological malignancies

2014
PMCID: 4261542
PMID: 25421940
DOI: 10.1186/s13045-014-0083-3

[…] down to those predicted to affect binding of miRNAs that are expressed in the relevant cell type, using databases integrating data on miRNA expression across different tissues and cell types, such as mimiRNA [] or the non-coding RNA body map []. Allele and genotype frequencies of the selected miRSNPs are then assessed in appropriate patient and control groups to identify miRSNPs associated with di […]

library_books

A Tri Component Conservation Strategy Reveals Highly Confident MicroRNA mRNA Interactions and Evolution of MicroRNA Regulatory Networks

2014
PLoS One
PMCID: 4108425
PMID: 25054916
DOI: 10.1371/journal.pone.0103142

[…] ability between miRNAs and their putative target mRNAs , , , TargetScan searches the conserved seed pairing regions in the 3′ untranslated regions (UTRs) of genes using whole genome alignment , , and mimiRNA incorporates the expression profiles of miRNAs and mRNAs . Among these algorithms, TargetScan has been reported to possess more robust prediction performance in various cellular systems . One […]

library_books

Genetic variation in the 3′ UTR of CYP1A2, CYP2B6, CYP2D6, CYP3A4, NR1I2, and UGT2B7: potential effects on regulation by microRNA and pharmacogenomics relevance

2014
Front Genet
PMCID: 4044583
PMID: 24926315
DOI: 10.3389/fgene.2014.00167

[…] using these prediction algorithms was performed using the most recent version and respective default settings. Eight datasets containing microRNA expression profiles in liver tissue was obtained from mimiRNA (http://mimirna.centenary.org.au/mep/formulaire.html) (Ritchie et al., ) and compared to microRNAs predicted by the different algorithms and microRNAs with targeting predicted to be affected b […]

library_books

Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

2013
PMCID: 3583062
PMID: 23467572
DOI: 10.2174/1574893611308010008

[…] files, and the ElMMo miRNA target prediction algorithm. It also integrates mRNA expression data and allow user to restrict the target prediction to specific mRNAs that expressed in a given cell type. mimiRNA [] integrates expression data from human miRNAs and mRNAs across multiple tissues or cell types. It groups and separates miRNA or mRNA expression data into several tissues and cell types. The […]

call_split

Genetic Variations Creating MicroRNA Target Sites in the FXN 3′ UTR Affect Frataxin Expression in Friedreich Ataxia

2013
PLoS One
PMCID: 3559822
PMID: 23382970
DOI: 10.1371/journal.pone.0054791
call_split See protocol

[…] Tif, which is a support vector machine-based miRNA-target filtering-system to distinguish true predicted target sites from false ones . miRNA expression profiling data were accessed through MirZ and mimiRNA . […]

call_split

Copy number variation of microRNA genes in the human genome

2011
BMC Genomics
PMCID: 3087710
PMID: 21486463
DOI: 10.1186/1471-2164-12-183
call_split See protocol

[…] sing 'feature coverage' and 'base coverage' tools available on the Galaxy, web portal for large-scale interactive data analyses [].The expression profiles of CNV-miRNAs were generated with the use of mimiRNA database [] that summarizes expression data from miRNA Atlas [], quantitative real-time PCR [,] as well as microarray and deep sequencing data from GEO (Gene Expression Omnibus) []. The assess […]

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mimiRNA institution(s)
Gene and Stem Cell Therapy Program, Centenary Institute, University of Sydney, Sydney, NSW, Australia

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