MimMiner statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

MimMiner specifications


Unique identifier OMICS_06541
Name MimMiner
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens

Publication for MimMiner

MimMiner in publications

PMCID: 5804013
PMID: 29415654
DOI: 10.1186/s12859-018-2048-y

[…] neuropsychiatric disorder [], and other areas in the biomedical domain [] including large-scale bioinformatics analyses [, –]. diseases predicted the association through the co-occurrence method []. mimminer [] transformed omim [] text to a relationship matrix and quantified the association among diseases using the term frequency–inverse document frequency method (tf-idf). catapult [] […]

PMCID: 5751445
PMID: 29297383
DOI: 10.1186/s12920-017-0311-0

[…] matrix, denoted as s bc, is an m×m symmetrical matrix with diagonal elements being ones., the normalized phenotype similarity scores (ranging from 0 to 1) between diseases are obtained directly from mimminer (http://www.cmbi.ru.nl/mimminer/suppl.html) [] which are constructed based on mesh terms []. the n×n disease-disease phenotype similarity matrix, s bd, is also an symmetrical matrix […]

PMCID: 5718078
PMID: 29212543
DOI: 10.1186/s12918-017-0519-9

[…] whose adjacent matrix is 16222 × 16222dimension. in this paper, we still call this final ppi network as humannet network or the original network., the phenotype similarity data was downloaded from mimminer database (http://www.cmbi.ru.nl/mimminer/suppl.html) created by van direl et al. they utilized text-mining method to describe phenotypes by medical subject headings vocabulary (mesh), […]

PMCID: 5601672
PMID: 28938576
DOI: 10.18632/oncotarget.17226

[…] results of poor performances. the datasets that were utilized in this study were downloaded from the following databases as follows., we downloaded the disease phenotype similarity scores from the mimminer which was developed by van driel et al. []. they computed a phenotype similarity score per phenotype pair via text-mining analysis of their phenotype descriptions in the online mendelian […]

PMCID: 5355324
PMID: 28076842
DOI: 10.18632/oncotarget.14510

[…] cancer type i and j, and sjk represents the corresponding prediction score for candidate lncrna (or gene) k in cancer type j (figure ). disease phenotype similarity scores were derived from the mimminer tool, which calculates the correlation scores of 5080 known disease phenotypes through text mining analysis []. the candidate disease genes and lncrnas were then ranked according […]

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MimMiner institution(s)
Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen, Nijmegen, Netherlands

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