MIMOSCA specifications

Information


Unique identifier OMICS_16531
Name MIMOSCA
Alternative name Multiple Input Multiple Output Single Cell Analysis
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data An expression matrix output by a high throughput scRNA-seq protocol, guide barcode (GBC) PCR data to pair perturbations with cell barcodes, a database of preassociated sgRNA/GBC pairs.
Output data The regulatory coefficient obtained from the model, the cell state effects, the cell size.effects
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements
scipy, numpy, matplotlib, sklearn, pandas, networkx, seaborn, svd, goatools, addgene
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Aviv Regev

Publication for Multiple Input Multiple Output Single Cell Analysis

MIMOSCA funding source(s)
This work was supported by a NDSEG Fellowship, NIH T32GM87232, the Klarman Cell Observatory, NHGRI RM1HG006193 and HHMI.

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