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MIMOX specifications

Information


Unique identifier OMICS_20908
Name MIMOX
Interface Web user interface
Restrictions to use None
Input data Some mimotope sequences.
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Kae Morishima
  • person_outline Jian Huang
  • person_outline Alex Gutteridge
  • person_outline Wataru Honda

Additional information


http://immunet.cn/mimox/intro.html

Publication for MIMOX

MIMOX citations

 (8)
library_books

Toxicity assessment of chlorpyrifos degrading fungal bio composites and their environmental risks

2018
Sci Rep
PMCID: 5794795
PMID: 29391422
DOI: 10.1038/s41598-018-20265-9

[…] uding stomach, liver, lung, spleen, kidney, brain, heart and genital. Based on the weight of organs, the organ coefficients were calculated according to following equation (Eq. ).1Organcoefficient(%)=mimo×100%where mi was the weight of organ (g) and mo presented the weight of whole body (g). Meanwhile, those organs were observed for pathologic features and then fixed by paraffin embedding, which w […]

library_books

Fundamentals and Methods for T and B Cell Epitope Prediction

2017
J Immunol Res
PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] equire to input antibody affinity-selected peptides and the 3D-structure of the selected antigen. Examples of bioinformatics tools for conformational B-cell epitope prediction using mimotopes include MIMOX [], PEPITOPE [], EPISEARCH [], MIMOPRO [], and PEPMAPPER [] ().As remarked before, methods for conformational B-cell epitope prediction generally require the 3D-structure of the antigen. Excepti […]

library_books

Conformational B Cell Epitope Prediction Method Based on Antigen Preprocessing and Mimotopes Analysis

2015
Biomed Res Int
PMCID: 4326220
PMID: 25705652
DOI: 10.1155/2015/257030

[…] to locate the best alignment sequences and predict possible epitopic regions.In these years, many mimotope-based conformational B-cell prediction methods have been proposed, such as MEPS [], 3DEX [], MIMOX [], Mapitope [, ], Sitelight [], EpiSearch [], PepSurf [], Pep-3D-Search [], and MimoPro []. These methods can be classified into two categories: sequence-sequence alignment methods and sequence […]

library_books

Peptide Vaccine: Progress and Challenges

2014
PMCID: 4494216
PMID: 26344743
DOI: 10.3390/vaccines2030515

[…] o tools, the selected peptide antigens can be further sequenced and aligned with antigen sequence, and if available, 3D structures can be superimposed. Some algorithms that can be of use are MimoPro, Mimox, Pepitope, MimoDB 2.0 []; Prediction of linear B cell epitopes using computerized algorithms such as propensity scale, machine-learning algorithm or a combination of these two, hybrid algorithm, […]

library_books

Bioinformatics Resources and Tools for Conformational B Cell Epitope Prediction

2013
PMCID: 3736542
PMID: 23970944
DOI: 10.1155/2013/943636

[…] hods, and hybrid methods.The motif-based methods aim to obtain motif through multiple alignment of mimotopes and then map the motif to the surface of an antigen to locate B-cell epitopes. MEPS, 3DEX, MIMOX, and the MimCons algorithm of MIMOP belong to this kind. MEPS is the first B-cell epitope predicting method based on mimotope analysis []. MEPS first model an antigen surface into fixed-length p […]

library_books

Peptide Based Vaccinology: Experimental and Computational Approaches to Target Hypervariable Viruses through the Fine Characterization of Protective Epitopes Recognized by Monoclonal Antibodies and the Identification of T Cell Activating Peptides

2013
PMCID: 3710646
PMID: 23878584
DOI: 10.1155/2013/521231

[…] unogenic domain. This process often requires the use of specific in silico tools, as epitope localization on antigen surface from mimotopes sequences might not be trivial; specific algorithms such as Mimox (http://immunet.cn/mimox/), Pepitope (http://pepitope.tau.ac.il/), and MimoPro (http://informatics.nenu.edu.cn/MimoPro/) are available online [–]. They all perform an alignment of provided mimot […]

Citations

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MIMOX institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan; School of Life Science and Technology, University of Electronic Science and Technology of China, China
MIMOX funding source(s)
Supported by grants from the Ministry of Education, Culture, Sports, Science and Technology and the Japan Science and Technology Agency and by NSFC project (30600138).

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