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Mimoza

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A metabolic model visualization and navigation system that allows for exploration of metabolic models in a semantically zoomable manner. The most general view represents the compartments of the model; the next view shows the generalized versions of reactions and metabolites in each compartment; and the most detailed view represents the initial network with the generalization-based layout (where similar metabolites and reactions are placed next to each other). Mimoza allows a human expert to grasp the general structure of the network and analyze it in a top-down manner.

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Mimoza classification

Mimoza specifications

Software type:
Package/Module
Restrictions to use:
None
Output data:
COMBINE archive
Programming languages:
Javascript, Python
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Input data:
SBML
Operating system:
Unix/Linux, Mac OS, Windows
License:
CeCILL version 2.1
Stability:
Beta

Mimoza distribution

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Mimoza forum

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No open topic.

Mimoza classification

Mimoza specifications

Interface:
Web user interface
Input data:
SBML
Programming languages:
Javascript, Python
Stability:
Beta
Restrictions to use:
None
Output data:
COMBINE archive
Computer skills:
Basic
Maintained:
Yes

Mimoza support

Maintainer

  • An Zhukova <>
  • An Zhukova <>

Credits

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Publications

Institution(s)

MAGNOME team at the Inria Bordeaux research center, Bordeaux, France

Funding source(s)

Inria CORDI-S

Link to literature

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