Mindboggle specifications


Unique identifier OMICS_13802
Name Mindboggle
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A preprocessed brain MR image data, a labeled cortical surface with labeled cortical and noncortical volumes, a brain volume extraction, segmentation and registration-based labeling
Output data A volume files, a surface meshes and a table
Output format NIfTI, VTK, CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, MATLAB, Python
Computer skills Advanced
Version 1.0.0
Stability Alpha
Maintained Yes



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  • person_outline Arno Klein <>

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Mindboggle institution(s)
Department of Psychiatry and Behavioral Science, Stony Brook University School of Medicine, Stony Brook, NY, USA; Department of Psychiatry, Columbia University, New York, NY, USA; Department of Speech, Language, and Hearing Sciences, Boston University, Boston, MA, USA; Center for Computational Neuroscience and Neural Technology, Boston University, Boston, MA, USA
Mindboggle funding source(s)
This work was supported by the National Institute of Mental Health (grant n°MH084029), the OASIS project (grants n°P50 AG05681, P01 AG03991, R01 AG021910, P50 MH071616, U24 RR021382 and R01 MH56584), the MMRR project (grants n°NCRR P41RR015241, 1R01NS056307, 1R21NS064534-01A109 and 1R03EB012461-01), the NKI project (grant n°R01 MH094639) and the HLN project (grant n°EB000461).

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