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Mindcontrol specifications

Information


Unique identifier OMICS_16716
Name Mindcontrol
Interface Application programming interface
Restrictions to use None
Programming languages Javascript, Python
Database management system Other
Computer skills Advanced
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Anisha Keshavan <>

Information


Unique identifier OMICS_16716
Name Mindcontrol
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Database management system Other
License Apache License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

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No version available

Documentation


Maintainer


  • person_outline Anisha Keshavan <>

Publication for Mindcontrol

Mindcontrol citations

 (3)
library_books

An extrasynaptic GABAergic signal modulates a pattern of forward movement in Caenorhabditis elegans

2016
PMCID: 4854516
PMID: 27138642
DOI: 10.7554/eLife.14197.028

[…] system (), which consists of an nikon te2000 inverted microscope, a high speed ccd camera, blue and green solid state lasers, and a digital micromirror device, all of which are controlled by the mindcontrol software (; the software is publisehd and available at http://www.nature.com/nmeth/journal/v8/n2/full/nmeth.1554.html). animals used in all the optogenetics experiments were raised […]

library_books

Simultaneous optogenetic manipulation and calcium imaging in freely moving C. elegans

2014
PMCID: 3970007
PMID: 24715856
DOI: 10.3389/fncir.2014.00028

[…] in 28.6 ± 3 ms (mean ± standard deviation, n = 3 trials, measured with a camera recording 198 frames per second)., the low-latency observed in the system is due in part to the high speed open-source mindcontrol computer-vision software package, written in c, which rapidly performs computer vision analysis. we have updated this software with new features for timed stimuli, improved tracking […]

library_books

Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans

2011
PMCID: 3032981
PMID: 21240279
DOI: 10.1038/nmeth.1554

[…] longer wavelengths for dark-field illumination to a camera. a motorized stage keeps the specimen in the field of view., to accelerate real-time image analysis of worm posture, we developed the mindcontrol software package using the open-source opencv computer vision library. an intuitive graphical user interface (gui) enables the user to dynamically target specific regions of freely moving […]


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Mindcontrol institution(s)
Department of Neurology, University California, San Francisco, CA, USA; UC Berkeley - UCSF Graduate Program in Bioengineering, San Francisco, CA, USA; The University of Alabama, Tuscaloosa, AL, USA; Department of Psychology, Boston College, Chestnut Hill, MA, USA; Department of Radiology and Biomedical Imaging, University California, San Francisco, CA, USA
Mindcontrol funding source(s)
This work was supported by a fellowship from the Canadian Institutes of Health Research (FRN-146793), and by the National Defense Science and Engineering Graduate Fellowship.

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